| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_0179 |
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| Symbol | |
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| ID | 3907784 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | - |
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| Start bp | 193912 |
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| End bp | 195951 |
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| Gene Length | 2040 bp |
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| Protein Length | 679 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 637882061 |
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| Product | DEAD/DEAH box helicase |
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| Protein accession | YP_483802 |
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| Protein GI | 86747306 |
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| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.970165 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCCATTCT CGACCACTCT CCCGCCGCTC GCCCGAGCCC TGGCGGAGCG CCATTATTCC
GAAGCCACGC CGGTGCAAAG CGCGGTGCTG GCGCCCGATG CCGCGGGCCG CGATCTGCTG
GTGTCGGCGC AGACCGGCTC CGGCAAGACC GTCGCCTATG GCCTGGCCAT CGCGCCCGAT
CTGCTCGGCG AGGCCGAGCG CTTCGAGCCG GCCGCCGCGC CGCTGGCGCT GATCGTGGCG
CCGACCCGCG AACTCGCGCT GCAGGTGCAT CGCGAACTCG GCTGGTTGTA CGGCGCCACC
GGCGCACGGG TGGTGTCCTG CGTCGGCGGC ATGGACCCGC GCCGCGAGCA GCGCGAACTG
GCCGAGGGCG CGCATATCGT GGTCGGCACG CCGGGGCGGC TGTGCGACCA TCTGCGCCGC
AACCGGCTCG ACGTCTCGCA ATTGAAGGCC GTGGTGCTCG ACGAGGCCGA CGAGATGCTC
GATCTCGGCT TTCGCGAGGA CATGGAGTTC ATCCTCAAGA CCACGCCCGA CAGCCGCCGC
ACGCTGCTGT TTTCGGCGAC GCTGCCGCGC GGCATCATCG CGCTGGCCAA GACCTATCAG
CACAACGCGT TCCGCGTCGA AGTCGCCGGC CGCGAAGGCG GCCACGCCGA TATCGAATAT
CGCGCCATCC GGATCGCGCC GAACGATGTC GAACACGCGG TGGTCAACAC CCTGCGCTAC
GTCGAATCGC CGACCGCGAT CGTGTTCTGT GCCACCCGCA GCGGCGTGAC CCATCTGCAG
ACCGCGCTGC TGGAGCGCGG CTTCTCGGTG GTGGCGCTAT CGGGCGAGCT CACCCAGAAC
GAGCGCACCA ACGCGCTCAA CGCGCTGCGC GACGGCCGCG CCAGGGTCTG CGTCGCCACC
GATGTCGCCG CCCGCGGCAT CGATCTGCCC AATCTCGGCC TGGTCATCCA CGCCGATCTG
CCCAACGATC CGGAAGTGAT GCAGCATCGC TCGGGCCGCA CCGGGCGCGC CGGCAAGAAG
GGCATCAGCG TTCTGTTGGT GCCGCCGGCG CGGCGGCGAC GCGCCGAATC GCTGCTCGGC
CTCGCCGGCA TCGAAGCGAT CTGGGGCACC GCGCCGCAGG CCGACGAGAT CCGCGTGCTC
GATCAGCAGC GCATGATGCA GGATGCGCTG TTCACCGAGG AGACCACGCC CGACGATCAG
GCGTTGGCGC AAGCGCTGCT CGCCGAGCGC TCTGCCGAGG AGATCGCGGT CGCGTTGGCG
CGGCTGTATC GCGCCCGGCT GCCGGCCCCG GAGGACATTC TCGATCCGGG CGAACGCCCG
GCCCGCGGCC GCGACGATCG CGCCCCCGCC AAGGGTGCGC GGGCGCCACG CGAGGAGCGC
GACTATGGTC CGCGCGACCC CGGTTCGCGG GCGCGCCCGG GCAAGGCCGG GCAGAAACAT
GCGATCACCG ACGGGGTCTG GTTTCGCGCC GCGATCGGCA AGCGCAAGAA CGCCGAGGCG
CGCTGGCTGC TGCCGATGAT CTGCCGCCGC GGCGGCATCG ATCGTCAGGC GATCGGCGCC
ATCCGGATCC TCGACACCAC CACCGAATTC GAGATCGCGG CCGCGGCCGC GGTGGACTTC
GCCGCGCAGA TCAAGCGTCC GGACAAGGAC GACAACATCC GGATCGAGCC CTTGATCGGC
GCCAAGCCGA TCGAAGCGGG CGCCGAGCGA GCCTTGTCCA AGCCGCATGG CGGTCAATTG
TCCGAACGCG AGACGCGCCG CAGCAAGCGG CCCGATTCGT GGTCGCCGCA GATCGAACCG
CTGGCCGACC CGCGCCCGCC ACGCGCCGGC AAGGATGCGG GGTTCAAGGA CGCCGGATTC
AAGAAGAAGC AAGTCTTCAA GAAGGATGGC TTCAAGCCGG AAGGTTTCAA GCAGGACGGC
TTGAAGACGA AAAAGTCGCG TGACGACAAG CCGGCCTATG TCAGCAAGGC ACGCCGTGCC
GATCCGTCGG CGCCCAACCC GGGCTTCAAG AAAAAGCCCA AGAAGAAGTT TCGCGACTGA
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| Protein sequence | MPFSTTLPPL ARALAERHYS EATPVQSAVL APDAAGRDLL VSAQTGSGKT VAYGLAIAPD
LLGEAERFEP AAAPLALIVA PTRELALQVH RELGWLYGAT GARVVSCVGG MDPRREQREL
AEGAHIVVGT PGRLCDHLRR NRLDVSQLKA VVLDEADEML DLGFREDMEF ILKTTPDSRR
TLLFSATLPR GIIALAKTYQ HNAFRVEVAG REGGHADIEY RAIRIAPNDV EHAVVNTLRY
VESPTAIVFC ATRSGVTHLQ TALLERGFSV VALSGELTQN ERTNALNALR DGRARVCVAT
DVAARGIDLP NLGLVIHADL PNDPEVMQHR SGRTGRAGKK GISVLLVPPA RRRRAESLLG
LAGIEAIWGT APQADEIRVL DQQRMMQDAL FTEETTPDDQ ALAQALLAER SAEEIAVALA
RLYRARLPAP EDILDPGERP ARGRDDRAPA KGARAPREER DYGPRDPGSR ARPGKAGQKH
AITDGVWFRA AIGKRKNAEA RWLLPMICRR GGIDRQAIGA IRILDTTTEF EIAAAAAVDF
AAQIKRPDKD DNIRIEPLIG AKPIEAGAER ALSKPHGGQL SERETRRSKR PDSWSPQIEP
LADPRPPRAG KDAGFKDAGF KKKQVFKKDG FKPEGFKQDG LKTKKSRDDK PAYVSKARRA
DPSAPNPGFK KKPKKKFRD
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