| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_4242 |
|---|
| Symbol | |
|---|
| ID | 3907208 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | - |
|---|
| Start bp | 5060834 |
|---|
| End bp | 5062768 |
|---|
| Gene Length | 1935 bp |
|---|
| Protein Length | 644 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637881568 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_483317 |
|---|
| Protein GI | 86742917 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.235556 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACAGCG TGGCCGGCGG GGTTCCGCAT CAGGAGATAC GGTCGCCTGG CATCGGTTCC
CGTGGCGCCG GTCAAAACGG CACCGGCCTG GACGATGTCG GCACCGCCGT GGACAACCTC
GTTTCCCGCC GGGTGGAGCG GCATGCCGCC CTGCGTTCCT ATCTGCGTTT CGTCGCGACC
TTCAAGGGGC CGGCTCTCCT GGTCGTCGGT GTCTTCGTCC TGTCCAACAG CCTGCTCGCC
GTGATACCGG TCCTCATCGG CCTTCTCGTG CAGGCTCTCG CCAGCGCCCC GGTACAGACC
CACGACGCGT ACCTGTACGC CGGCGTCCTT CTCGCGTGCA ACATCGGCCA TGACCTGACC
TGGCGTGGTG CCGAGGTGCT GTATCTCCGG CTACTCAACC ACCGGGGCTA CGAATACGAG
AACATTCTCT TTGGAAATGT CATAAACGAG CGATATCCAT ACTTCGTCGG CAAGTTCACC
GGAAAGATCA GCAGCTATGT GAGCACGCTC GGCCGCGAGT TCCGAGAGAT CCTCGAGACG
GCGTGCTTCA CGTACGTTGA ACAGCTGGTC AAGGTTCCGG CGATCCTAAT GATCATGTTT
TCGGTTAACC TTTACTCGGG CCTGACCTTC CTGGGTTCCG TCGCGATCAT GCTTCTTGTT
GGCAGGCACA CCGTCCGTCG TTCGGCCCGC GCGGAGAAGC GGCTCGCGGA CGAGGTCTCG
GAGATGGACG GTTACGTGAT CGACGTCATC TCGAACTTCG TGAGCGTGAA GTCGTTCCTC
CAGGAGGAGG CCGAGTACGA GCGGGTCCGC CGGCGTCGTC GCCAGGTCAT CGCCGCCGCG
TATCGCTCGT CCTTCTGGAG CATTGTGTTC TGGACCTCGA TGAGCCTCGT GGTCCGGTAC
CTCGTCTGGC CGGTGTCGAT CGTCCTCAAC CTGTATCTAT TCCTCCACGG TGAGATGAGC
CTGGCCCAGT TCACGACCTT TCTCTCCGCG CTGGTCCTCT TCTCCGACTT TATCTGGGGG
ACGGTGTGGG AGATTGCGCA GCTCAATCTC CGACTCGCCC GCATCGAGGA GGCCTACCAC
TACCTCTTCG CCGGTCGGAA CATCCTGTCA GCCGGTCCGG ATAATTCGGC CAGTCCGGAT
AATTCAGCCG GTTCAGCTGG TTCAGGCCGT CCTGCGGTTC TTCCCGCGGT TTCCGGTCGG
CTGCAGTTCC AGGGCCTGTC GTTCGCCTAT CCCGAGAACG ACCGGAACCT CGTGCTCGCG
GGCATCGACC TGGCCATCGA GCGGGGCGAA AAGATCGGCA TCGTGGGTCG CAGCGGAAGC
GGCAAGACGA CGTTCATCAA GCTGTTGCTA GGCTACTACC CGCTCCCACC GGGCATGGTC
GCCGTGGACG GTGTTCCGGT GTCCAACCGC CAGCTCGCTC GGGGTATCTC CTACGTTCCG
CAGGACACCA CCCTCTTCCA CCGGTCCATC CGGGACAACA TCGTCTACGG GACCGCGGGC
CCGGTGACCC AGGCGCAGGT GGAGGCGGCG GCGCTGCGGG CCCACGCGCA CAGCTTCATC
TCGCGGGCGC CCGACGGTTA CGACACCGTC GTCGGGGAAC GTGGCATCAA ACTCTCGACC
GGGCAACGGC AGCGGATCGC CATTGCCCGC GCCTTCCTGG ACGACAAACC CATCCTCATT
CTGGACGAGG CGACGAGCGC GCTGGACAGC GAGAGCGAGG TACTCGTCCA GAACGCACTC
GAGAACCTGT GGCGAGACAA GACGGTGATC GCCGTCGCGC ACCGGCTGTC GACCCTGCTG
CACATGGACC GCATCGTCGT CCTCGACGAC GGCCGCGTCG TGGAGCAGGG GTCCCATCGC
GAGCTGCTCG AGCGGCGGGG GCGCTACCAC CGGCTGTGGC AGCGGCAGAG CGGAGGAATG
ATCCCGGTCG AGTAG
|
|---|
| Protein sequence | MDSVAGGVPH QEIRSPGIGS RGAGQNGTGL DDVGTAVDNL VSRRVERHAA LRSYLRFVAT
FKGPALLVVG VFVLSNSLLA VIPVLIGLLV QALASAPVQT HDAYLYAGVL LACNIGHDLT
WRGAEVLYLR LLNHRGYEYE NILFGNVINE RYPYFVGKFT GKISSYVSTL GREFREILET
ACFTYVEQLV KVPAILMIMF SVNLYSGLTF LGSVAIMLLV GRHTVRRSAR AEKRLADEVS
EMDGYVIDVI SNFVSVKSFL QEEAEYERVR RRRRQVIAAA YRSSFWSIVF WTSMSLVVRY
LVWPVSIVLN LYLFLHGEMS LAQFTTFLSA LVLFSDFIWG TVWEIAQLNL RLARIEEAYH
YLFAGRNILS AGPDNSASPD NSAGSAGSGR PAVLPAVSGR LQFQGLSFAY PENDRNLVLA
GIDLAIERGE KIGIVGRSGS GKTTFIKLLL GYYPLPPGMV AVDGVPVSNR QLARGISYVP
QDTTLFHRSI RDNIVYGTAG PVTQAQVEAA ALRAHAHSFI SRAPDGYDTV VGERGIKLST
GQRQRIAIAR AFLDDKPILI LDEATSALDS ESEVLVQNAL ENLWRDKTVI AVAHRLSTLL
HMDRIVVLDD GRVVEQGSHR ELLERRGRYH RLWQRQSGGM IPVE
|
|---|
| |