| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_4180 |
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| Symbol | |
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| ID | 3907145 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Frankia sp. CcI3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007777 |
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| Strand | - |
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| Start bp | 4983821 |
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| End bp | 4985794 |
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| Gene Length | 1974 bp |
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| Protein Length | 657 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 637881508 |
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| Product | PAS/PAC sensor hybrid histidine kinase |
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| Protein accession | YP_483257 |
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| Protein GI | 86742857 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
[COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0157583 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.971406 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAAGGGTT CCTCAGACCT GGCCAGCGGT CTGTTGGAGG CGGCACCGGA CGCGATCGTC
GCCGTCCGGG ACGACGGGGC CATCGTCCTG GTCAATACGC AGGCCGAGCG GCTGTTCGGC
TACACCCGCG ACGAGCTGGT CGGCCAACCG GTCGAGATCC TCATCCCGGT CGGTGTCCGC
GCCGTCCATC CTGATCATCG GAACCGCTAC TTCGCCGATC CCCGGCCGCG CCCGATGGGT
GCCGGCATGG AACTGGCCGG GCGCCGCCGC GACGGCAGCG AGTTCCCCGC CGAGATCAGT
CTCAGCCCGT TGGAGACCGA GGAGGGAACG ATTGTCTCCG CGGCCGTGCG TGACGTGACC
GACCGCAAAC GGGCGGAGGC GAAGTTCCGC GGCCTGCTGG AAGCCGCGCC CGACGCGATC
ATCGGAGTCC GCCCCGATGG ACAGATCGTC CTGGTCAACG CGCAGGCCGA GCGGCTGTTC
GGCTACACCC GCGACGAGCT GGTCGGCCAA CCGGTCGAGA TCCTCATCCC GGTCGGTGTC
CGCGCCGTCC ATCCTGATCA TCGGAACCGC TACTTCGCCG CCCCCCGCCC CCGGCCGATG
GGTGCCGGCC TCCAGCTCGC CGCCCGCCGC CGCAACGGCA GCGAGTTCCC CGTGGAAATC
AGTCTCAGCC CGCTGGAGAC CGAGGAGGGA ATACTCGTCT CCGCGGCGGT CCGGGACGTC
ACCGACCGCC TCGAAGCCCA GGCCGAGGGG GAACGGTTGC GCGTCGAGGC GCAACGCCGC
AACTTCGAGG CCCAGCTCCA CCAGTCCCAG CGGTTGGAAA GCCTCGGCCA GCTCGCCGGC
GGGGTGGCGC ACGACTTCAA CAACCTCCTC GGCGTCGTCA TCAACTATGC CTCGTTCGTC
GCCGAGGAGG TCGCCCAGGC TGCCGCCACA CAGACCGCGG GCGGACGGTG GAGCGACGTG
CTGCGCGACA TCGAACAGAT CCAACGCGCC GCCGACCGCG CCACCGCCCT CACCCACCAG
CTCCTCACCT TCGGCCGCCG CGAAACCGTG CAGCCCCGGG TACTCGACCT CAACCAGGTC
GTCACCGACC TGGAGAACCT GCTGCACCGC ACCCTGGGCG AACACATCGA GCTGCACATT
CATCTGCAAC CCGAGCTGTG GCCCATCCTG GCCGACCCCG GCCAGATCGA ACAGGTCCTG
ACCAACCTTG CCGTCAACGC CCGCGACGCC ATGCCCGACG GCGGCGTGCT GACCATCGAC
ACCGCCAACA TCACGATCGA TCCGGACTAC GCGGGCGAAC GCCCGGGCGT GAAAGCCGGC
CCGCATGCCC GGATCCGCGT CTCCGACAGC GGCACCGGCA TGCCCCCGGA GGTCCTTGCC
CGGGTCTTCG AACCGTTCTT CACCACGAAA CCCAAGGGGG AAGGCTCCGG CCTCGGCCTC
GCCACCGTCT ACGGGATCAT CAGCCAGGCC GGCGGAAACA CCGACATCTA CTCCGAACCC
GGGGTTGGCA CCACCATTCG CTGCCTGCTC CCCGCCACCG CCGCCATCAC CACGGACGCC
GCCGGTCAGC CGGACACCAC GACCGGCACT CCAGCACACG CGGGCGAGAC CGTCCTGCTC
GTCGAGGACC AGCCCGCCAT CCTCGAGGTC ACCCGCCGCC TGCTTGCCCG CAACGGCTAC
CAGGTCCTCA CCGCTACCTC CGCCGACGAG GCCCTCCCCC TCGCAGCCGA CCACCCCGGC
CCCATCCACC TGCTGCTGAC CGACGTCATC ATGCCGCGCC TGCAGGGCAA GGAACTCGCC
AGCCGGATCC GCTCCACCCG CCCCGAAATC CGGGTGCTCT ACATGTCCGG CTACGCCCAC
CCGGTCCTCG CCACCCAGGG GAAACTTGAT CCCGGTGTCA TCCTGCTCGA AAAGCCCTTC
TCCGAACGGG TCCTGCTCGC CAAAGTCCGA GATGCCCTCA ACTCTTCGAC CTGA
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| Protein sequence | MKGSSDLASG LLEAAPDAIV AVRDDGAIVL VNTQAERLFG YTRDELVGQP VEILIPVGVR
AVHPDHRNRY FADPRPRPMG AGMELAGRRR DGSEFPAEIS LSPLETEEGT IVSAAVRDVT
DRKRAEAKFR GLLEAAPDAI IGVRPDGQIV LVNAQAERLF GYTRDELVGQ PVEILIPVGV
RAVHPDHRNR YFAAPRPRPM GAGLQLAARR RNGSEFPVEI SLSPLETEEG ILVSAAVRDV
TDRLEAQAEG ERLRVEAQRR NFEAQLHQSQ RLESLGQLAG GVAHDFNNLL GVVINYASFV
AEEVAQAAAT QTAGGRWSDV LRDIEQIQRA ADRATALTHQ LLTFGRRETV QPRVLDLNQV
VTDLENLLHR TLGEHIELHI HLQPELWPIL ADPGQIEQVL TNLAVNARDA MPDGGVLTID
TANITIDPDY AGERPGVKAG PHARIRVSDS GTGMPPEVLA RVFEPFFTTK PKGEGSGLGL
ATVYGIISQA GGNTDIYSEP GVGTTIRCLL PATAAITTDA AGQPDTTTGT PAHAGETVLL
VEDQPAILEV TRRLLARNGY QVLTATSADE ALPLAADHPG PIHLLLTDVI MPRLQGKELA
SRIRSTRPEI RVLYMSGYAH PVLATQGKLD PGVILLEKPF SERVLLAKVR DALNSST
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