| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_3898 |
|---|
| Symbol | |
|---|
| ID | 3906666 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | + |
|---|
| Start bp | 4662995 |
|---|
| End bp | 4663912 |
|---|
| Gene Length | 918 bp |
|---|
| Protein Length | 305 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637881224 |
|---|
| Product | hemolysin III family channel protein |
|---|
| Protein accession | YP_482977 |
|---|
| Protein GI | 86742577 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1272] Predicted membrane protein, hemolysin III homolog |
|---|
| TIGRFAM ID | [TIGR01065] channel protein, hemolysin III family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGAGAACTC GAACGTACTC GTGGACGTTC AGACAAAACC CACAATATAG GGGAAGTTCG
AGGCCACGTT CAGGATCATT AGACTGTACC GCGCGTTCCG TCCGCAGTCG CGCGATAGCG
AGTGCGCAGA AGCGTCGGAT CCATCACGCA CCGATACGGA CCGACCGCTG CCGTCCAGCT
CCGCTTCGTG ACGGCGGCAA CCCTCGGGTT ATCGTTCTCG GCGTGGCTTC CCTCGTACAG
CAGCCAGCCG GGCCTCCGCA GACGGACATC GCCTCGCACC CGCGTGACCT GGTGCGACCG
CGCATGCGGG GATGGCTACA TGCCGGCGCG TTCCCGATCA GCCTGACACT AGGCGTCATT
GCGGTGGCAC TGGCTACCAC GCTGCGTGCC CGGCTCGGTG TCGCGGTTTA CGCCCTGAGT
ATTGCGGCCC TCTTCGGAAC GAGCGCCCTC TATCACCGGA CGATGTGGTC GACATCACGT
GCCCGGGCGC GCATGAAGCG TCTCGACCAC TCAATGATCT TTGTTTTCAT CGCCGGGACT
TACACCCCCT TCGCCCTGAT CGCGATGCCG CCGACGACCG CTCGGGTGGT CCTGGCGGTG
GTGTGGGGAG GGGCGGGACT CGGCGTCGCC ATCCGGATGC TGTGGCTGCA CTCGCCGCGG
TACCTGACCG TGCCGCTCTA CATCGCGCTC GGCTGGGTAG CCGTCTTCGT GATCCCGGAG
CTCGCCCACC GGGCCGGGAT CGCCTCGATG GTACTTCTGC TCGTGGGGGG GGTCTGCTAC
AGCCTCGGCG CCGTCGTCTA CGCCTGCCGG CGACCGGACC CGGCACCCAC GATCTTCGGC
TACCACGAGG TGTTCCATGC CTTCACCCTC GTCGCCGCGA CCTGCCACTA CATTGCGCTG
CTCTTCGCCA TCTACTAA
|
|---|
| Protein sequence | MRTRTYSWTF RQNPQYRGSS RPRSGSLDCT ARSVRSRAIA SAQKRRIHHA PIRTDRCRPA
PLRDGGNPRV IVLGVASLVQ QPAGPPQTDI ASHPRDLVRP RMRGWLHAGA FPISLTLGVI
AVALATTLRA RLGVAVYALS IAALFGTSAL YHRTMWSTSR ARARMKRLDH SMIFVFIAGT
YTPFALIAMP PTTARVVLAV VWGGAGLGVA IRMLWLHSPR YLTVPLYIAL GWVAVFVIPE
LAHRAGIASM VLLLVGGVCY SLGAVVYACR RPDPAPTIFG YHEVFHAFTL VAATCHYIAL
LFAIY
|
|---|
| |