| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_3855 |
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| Symbol | |
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| ID | 3905603 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Frankia sp. CcI3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007777 |
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| Strand | - |
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| Start bp | 4619021 |
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| End bp | 4620100 |
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| Gene Length | 1080 bp |
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| Protein Length | 359 aa |
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| Translation table | 11 |
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| GC content | 74% |
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| IMG OID | 637881181 |
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| Product | succinyl-diaminopimelate desuccinylase |
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| Protein accession | YP_482934 |
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| Protein GI | 86742534 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
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| TIGRFAM ID | [TIGR01900] succinyl-diaminopimelate desuccinylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.149878 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCCTCG ACCTCACGGC GCCCGTCGGC GAGCTGACCC GGGCGCTGGT TGACGTGCCC
TCGGTGAGTG GGGACGAGGC CGCCCTCGCG GGCGCGGTGG AGAAGGCGCT CACCGCGGTG
GACGGGCTGC GGGTTGACCG GGACGGTGAC GCCGTGGTGG CCAGGACCGA GCTGGGGCTG
CCCGGCCGGA TCCTGCTTGC CGGCCATCTG GACACCGTTC CGCTGGCGGG CAACCTGCCC
TCGCGTGTGG TGGGCGGGCG GCTCTACGGC TGCGGGACGT CGGACATGAA GGCAGGGGTC
GCGGTCGCGC TGCGGCTCGC GGCCACGCTC CCGGTCGCCA CGCCCGGCGC GATGAGCCAC
GACGTCACCT GGGTCTGCTA TGACCACGAG GAGGTCGAGG CGGCCCGCAA CGGGCTGCGT
CGGCTCGCCG CCCGGCACCG GGACTGGCTG GATGCGGATC TGGCCATCCT GATGGAACCG
ACCTCCGGCG AGATCGAGGC GGGTTGCCAG GGCACCCTGC GGGTGGTCGT GACGCTTCCC
GGCACCCGGG CGCACTCGGC CCGGTCGTGG CTCGGGGACA ACGCCATCCA CAAGGCCGGC
GATCTGCTCC GCCGCCTCGC CGGCTACCGG GCGCGGACGG TGACGCTGGA CGGCTGCACT
TACCGTGAGG GGCTCTGCGC GGTGCGGATC GACGGTGGGG TGGCGGGCAA CGTGATCCCC
GACCGGTGCC AGGTCACGGT GAACTTCCGG TTCGCTCCGG ACCGGGGCCC CGACGAGGCG
GTGGCGCATG TTCGCGAGGT GCTGGGTGGC TACGACGTCG AGGTCACCGA TCTCGTCGGC
GGGGCGCTGC CCGGGCTCGC CGCCCCGCAC GCGGCGGCGT TCGTCGCCGC CACCGGTCGT
GTGCCGGTGG CGAAGTACGG CTGGACGGAC GTGGCGCGCT TCGCCGAGCT CGGGATCCCG
GCGCTCAACT ACGGGCCGGG CGATCCCAAC CTGGCCCATG CCCGGGACGA GTACGTCGAG
CTCGCCGCGA TCGACGAGGC CGAGCGGCTG CTACGGGCGT ACCTGTCCGG TGTCTCCTGA
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| Protein sequence | MSLDLTAPVG ELTRALVDVP SVSGDEAALA GAVEKALTAV DGLRVDRDGD AVVARTELGL
PGRILLAGHL DTVPLAGNLP SRVVGGRLYG CGTSDMKAGV AVALRLAATL PVATPGAMSH
DVTWVCYDHE EVEAARNGLR RLAARHRDWL DADLAILMEP TSGEIEAGCQ GTLRVVVTLP
GTRAHSARSW LGDNAIHKAG DLLRRLAGYR ARTVTLDGCT YREGLCAVRI DGGVAGNVIP
DRCQVTVNFR FAPDRGPDEA VAHVREVLGG YDVEVTDLVG GALPGLAAPH AAAFVAATGR
VPVAKYGWTD VARFAELGIP ALNYGPGDPN LAHARDEYVE LAAIDEAERL LRAYLSGVS
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