| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_3592 |
|---|
| Symbol | rimM |
|---|
| ID | 3904146 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | - |
|---|
| Start bp | 4291279 |
|---|
| End bp | 4291818 |
|---|
| Gene Length | 540 bp |
|---|
| Protein Length | 179 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 637880913 |
|---|
| Product | 16S rRNA-processing protein RimM |
|---|
| Protein accession | YP_482673 |
|---|
| Protein GI | 86742273 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0806] RimM protein, required for 16S rRNA processing |
|---|
| TIGRFAM ID | [TIGR02273] 16S rRNA processing protein RimM |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGCTGAGG AGATCGTCGT CGGGCGGATC GGCCGTCCGC ATGGCATCCG CGGTGAGGTC
ACGATCGAGA TTCGTACCGA CGTGCCCCAC CGCAGGTTTG TCGTAGGGGC GGTCCTCGGT
CGCGAGGGGG GGGGGACTGC GCTCACCGTC TCCGGCGCTC ATTGGCACTC GGGCCGCCTG
TTGCTTCACT TTCGCGGGGT GGACGATCGT GGCGCCGCGG AGGCGCTGCG CGGCGTGCTC
CTGACCATCG ACGCGGATCA GGCGGGATCG CCGCTCGACG ACGCCGACGG TGACGGCGAA
GCCGTGGAGA TGTGGTGGGA TCGGGACCTG GTCGGCCTGC GGGCGGTGAC CACGGCGGGC
ATGTTGTTGG GGCACGTCAC CGACATCATT CACTCCCCTG CGGGAGACCT GCTCGCGATC
GGCGGCCCGG ACGGTGGCGA GCATCTCGTC CCCTTCGTCC GTGACATCGT GCCGACCGTC
GACCCCCCCG CCGGCCGGAT CGTCGTGGAT CCGCCGCCCG GCCTGCTCGA TCTCGATTAA
|
|---|
| Protein sequence | MAEEIVVGRI GRPHGIRGEV TIEIRTDVPH RRFVVGAVLG REGGGTALTV SGAHWHSGRL
LLHFRGVDDR GAAEALRGVL LTIDADQAGS PLDDADGDGE AVEMWWDRDL VGLRAVTTAG
MLLGHVTDII HSPAGDLLAI GGPDGGEHLV PFVRDIVPTV DPPAGRIVVD PPPGLLDLD
|
|---|
| |