| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_3514 |
|---|
| Symbol | dapF |
|---|
| ID | 3905248 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | - |
|---|
| Start bp | 4198069 |
|---|
| End bp | 4198977 |
|---|
| Gene Length | 909 bp |
|---|
| Protein Length | 302 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 637880836 |
|---|
| Product | diaminopimelate epimerase |
|---|
| Protein accession | YP_482596 |
|---|
| Protein GI | 86742196 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0253] Diaminopimelate epimerase |
|---|
| TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.0771524 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCCGAGCG GCATCCCCCG TACGATCGGC GACGTGCGGG ACGAGCTGGA ACTGCGATTC
GTCAAGGGCC ACGGGACGGG CAACGACTTC GTCCTGCTGC CGGATCCCGA CGGGGACCTC
GACCTCACCG CGGACCTGGT GCGCGCGCTG TGCGACCGAC GGACCGGCAT CGGGGGCGAC
GGGGTGCTGC GGGTGGTGCT CTGCGCCGCG GTTCCCGAGG CGGCCGGTCT GGCCGGCCGG
GCGCGCTGGT TCATGGACTA CCGCAATGCT GACGGTTCGG TTGCCGAGAT GTGCGGTAAC
GGCGCCCGGG TGTTCGCCCG CTACCTCGTC GACGCCGGAT ACGCCCAGCC CGGACGGTTC
CACGTCGCGA CCCGCGCCGG GTTGCGGCTC GTCGAGGCCG CGGTGGACGG TGACGTCACG
GTCGACATGG GACCGCCGCG GATCATCGAC GGACCCGGGG CCCCGGTCAC CGTCGCCGAT
CGTGACTTCA CCGCGACCGC GGTCTCGATG GGTAATCCGC ACGCGGTCTG CTTCGCCGGC
GACCTGGACG TCGCCGGGCT GCGTCGGCTC GACCTGACCC GACCACCGTC CTTCTCCCCG
GTTGACTTCC CGGACGGGGT GAATGTGGAG ATCGTCGTCG ACCGGCCGGC TGGGGTGGCG
ATGCGGGTGT TCGAACGTGG GGTCGGGGAG ACCGCGTCCT GCGGCACCGG TGCCTGCGCG
GTCGCGGTGG CCTGGGCGGC CCGGCGAGGT GCCCGGCCGG CGGGTGCGCC GGTCGAGGTC
GAGGTGGATG TGCCCGGCGG CGGCCTGGTC GTGATCTGGC AGCCGGAGAC CGTGCTGTTG
CGAGGGCCCG CCGAGCTGGT CTTCGACGGC GTGCTGCGCC GTGCGGAGGC CCACGACCCG
GTCGGGTGA
|
|---|
| Protein sequence | MPSGIPRTIG DVRDELELRF VKGHGTGNDF VLLPDPDGDL DLTADLVRAL CDRRTGIGGD
GVLRVVLCAA VPEAAGLAGR ARWFMDYRNA DGSVAEMCGN GARVFARYLV DAGYAQPGRF
HVATRAGLRL VEAAVDGDVT VDMGPPRIID GPGAPVTVAD RDFTATAVSM GNPHAVCFAG
DLDVAGLRRL DLTRPPSFSP VDFPDGVNVE IVVDRPAGVA MRVFERGVGE TASCGTGACA
VAVAWAARRG ARPAGAPVEV EVDVPGGGLV VIWQPETVLL RGPAELVFDG VLRRAEAHDP
VG
|
|---|
| |