Gene Francci3_3509 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFrancci3_3509 
Symbol 
ID3905243 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFrankia sp. CcI3 
KingdomBacteria 
Replicon accessionNC_007777 
Strand
Start bp4193550 
End bp4193924 
Gene Length375 bp 
Protein Length124 aa 
Translation table11 
GC content71% 
IMG OID637880831 
Productpeptidoglycan-binding LysM 
Protein accessionYP_482591 
Protein GI86742191 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.137678 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGGATCCG CACACAGGGC GCGGGTCGTC GACCTGTCGA TGGCCAGGGA CCGGGTGGGT 
CATCGGCCGC CGGGTCGCCC GCCCGCACCC CCGCCGCTCC GGCTGACCCG GCGGGGTCGG
GTGGTGGTGG TATCGATCGT CGTGGCGGTC GTCGTGGCGG TAGCAATCAT GATCATGCCT
GGGGTGTCGA TTGCCGGGCC GGATACCGCG GAGGCGCCGC GGCACCATCT GGTCATGCCG
GGGGAGACGC TGTGGGAGGT GGCAGTGGCG CTCGACGAGA GCGCCGACAC CCGGGTCATG
GTGGACCGGC TGATGCGGCT GAACCACCTG CGGTCACCAC TGATCGCCCC GGGCCAGTCG
TTACTCCTTC CCTGA
 
Protein sequence
MGSAHRARVV DLSMARDRVG HRPPGRPPAP PPLRLTRRGR VVVVSIVVAV VVAVAIMIMP 
GVSIAGPDTA EAPRHHLVMP GETLWEVAVA LDESADTRVM VDRLMRLNHL RSPLIAPGQS
LLLP