Gene Francci3_3480 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFrancci3_3480 
Symbol 
ID3905214 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFrankia sp. CcI3 
KingdomBacteria 
Replicon accessionNC_007777 
Strand
Start bp4148285 
End bp4149904 
Gene Length1620 bp 
Protein Length539 aa 
Translation table11 
GC content72% 
IMG OID637880802 
Productregulator of polyketide synthase expression-like 
Protein accessionYP_482562 
Protein GI86742162 
COG category[Q] Secondary metabolites biosynthesis, transport and catabolism
[T] Signal transduction mechanisms 
COG ID[COG2508] Regulator of polyketide synthase expression 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTGACGG ACGTGGCAGC CTCTTCCTCG GATTCCTCCT CGGACACAGT GACTGGGACA 
GCCCGCCTTG AACCGGGGGC GCCCCCCGTC CCGACACCGG CAGGCGAGAT CGAGCCGAGC
CCCGAAACCG AGCCGAGCCC CGAAACCGAG CCGAGCCCCG AAACCGAGCC GAGCCCCGAA
ACCGAGCCGA GCCCCGAAAC CGGGCCGGTG CCGGAGCAAT CCGTCGACTA CCCGGAGCCG
CGTATCCCCG ATCTGGGCAA CCCGTGGTCG GCCGGCGGGG CCAGCCCCAG ACCCGCCGGC
GACCAGGCCC GACCCACATC GACCGGGAGC ACATCCGGCG GAGAAAGCAC CAGCGAGGTG
ATCCGCCGGG TGGAACGGTC GAGCGGGATG CTCGCATCCC GGGCGGCGGC CCGGATGGCG
GAGGCGCTGC CCTGGTTCCC GGCCATGTCG GCGAGTCACC GCGCCGGAAT TCAGCTCGTG
GTGCAGGCCG GCATCTCGTC GTTCGTGGAG TGGTGCCGGC GGCCCGAACA CGCCCGGGAT
CTGTCCGAGG ACGTCTTCCG GGTCGCCCCG CGGGAACTCG TCCGCGCCGT GACCTTCCGC
CGACTCGTCG ATCTGGTCCG GGTCGCGGTG GAGGCGATCG AGGCCGAGGT GCCGAACCTG
GCCGGCCCGG AGCACGAACA ACGGCTGCTC GCCGATGTCC TGCGTTACTC CCGTGACATC
GCGTTCGCCG GCGCGGTCGT CTACGCCCGC GCCGCTGAGG AACGCGGTGC CTGGGACGCC
CGGCTGGAGG CGCTGGTCGT CGACCACGTG GTCCGGGGCG AGGTCGACCG GGCGCTGCCG
TCACGGGCGG CCGCGGTGGG CTGGCGTAAC CCGCCGTCCG TCACCGTCAT CGTCGGCACG
GCCGGGAGCA ACTCGCCGGA GGTGGTGGTC GATGAGGTGC ACCGGCTCGC CCGCATGGCC
CAACTGGAGG TTCTCGCCGG GGTCCACCAC GATCGCCTGG TGATGGTGGT CGGCGGGAAT
TTCACTGCCG GCAGGGACGG CATCGGCCGT CCCGAGATGA CCCTCCAGCC GGAGAACAGC
GTCGAACCTC CCGCCACCGC GGGTACCCGT CCGGCCGGCG GCACCGCGCC GGTGAACACT
GTCCTGGACG CGGCCCGGGC ACTGCTTCCC GCCTGCGGGC CGGGCCCGGT GGTGGTCGGC
CCGGTGGTCG GTGACCTGAC CGGGGCACCG CACGCGGCGC GGGTCGCCCT CGCCGCCACG
GACGTGGTCG CCGCCTGGCC AGCCGCACCC CGGCCGGTCA TGGCCCGCGC TCTGCTCCCG
GAACTCGCCC TCGCGGGGAA CGTCGACGCC CGGCGGGCGC TCATCGACGA GGTGTACGCC
CCGCTGCGCG ACGCCGGTAC CCCACTACTG GAGACCACCG GGGCCTATCT CGACTTCGGC
TCGTCGCTGG AGGCGACGGC CCGGGCGCTG TATCTCCACA CCAACACGGT CCGCTACCGA
CTCCGTAAGG CCGCCGAGGT GTGCGGGCTG GATCCGGCGG ACCACCGCGA ACGCTTCATC
CTGCATATTG CGCTCGTTCT GGGACGCCTC GACGGTGTGT TACCTACAGG CAAAACATGA
 
Protein sequence
MLTDVAASSS DSSSDTVTGT ARLEPGAPPV PTPAGEIEPS PETEPSPETE PSPETEPSPE 
TEPSPETGPV PEQSVDYPEP RIPDLGNPWS AGGASPRPAG DQARPTSTGS TSGGESTSEV
IRRVERSSGM LASRAAARMA EALPWFPAMS ASHRAGIQLV VQAGISSFVE WCRRPEHARD
LSEDVFRVAP RELVRAVTFR RLVDLVRVAV EAIEAEVPNL AGPEHEQRLL ADVLRYSRDI
AFAGAVVYAR AAEERGAWDA RLEALVVDHV VRGEVDRALP SRAAAVGWRN PPSVTVIVGT
AGSNSPEVVV DEVHRLARMA QLEVLAGVHH DRLVMVVGGN FTAGRDGIGR PEMTLQPENS
VEPPATAGTR PAGGTAPVNT VLDAARALLP ACGPGPVVVG PVVGDLTGAP HAARVALAAT
DVVAAWPAAP RPVMARALLP ELALAGNVDA RRALIDEVYA PLRDAGTPLL ETTGAYLDFG
SSLEATARAL YLHTNTVRYR LRKAAEVCGL DPADHRERFI LHIALVLGRL DGVLPTGKT