| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_3371 |
|---|
| Symbol | |
|---|
| ID | 3905953 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | - |
|---|
| Start bp | 4000740 |
|---|
| End bp | 4002206 |
|---|
| Gene Length | 1467 bp |
|---|
| Protein Length | 488 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 637880694 |
|---|
| Product | FAD dependent oxidoreductase |
|---|
| Protein accession | YP_482455 |
|---|
| Protein GI | 86742055 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.0604216 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGCGATC CGTCGGCTAC GTGTGATGTC GTCGTCGTCG GTAACGGTTC GGTCGGCATG
TCACTGGGAC TGGTGCTCGC CCGTCGGAGC CTCAGGGTCG CGGTGGTCGG CGAGTCCGCA
CGGCCGTGGG CCGCGTCGGC GGCTGCCGGC GCCATGAACG GGTGCTTCGG GGAGGTCACC
CCGCAGCTCC TGCGCAGTGA GGTCGGCCGG CTCAAGCTGG AGATGGACTT CCGCGCCACA
GCCCTGTGGA CGGACTGGGA ACAGGCCCTG CTGGAGGAGT CCGACGAGAC CGCGATCCGG
ACCGCGCACG GCACCACCGT CATCCTGAAC ACGATCGGTG TCCACGACAT CGACACCGGC
GGGTACGAGG CGATCCGGAC CGCGCTGGAG GAGTACAAGG AGCCCTACGA GGAGGTGGAT
CCGGCCTCGC TCGACTGGCT CGATCCGGTC CCCACCTCCC GTCCCCTGCG GGCGATGCAC
ATCCCCGGCG AGCACGCCGT CGACAGCCCG GCCCTGCTGA CCGCTCTGGA GACGGCGATC
CGGCGCCGCG GCGGCACGCT GATCGACGAC CTCGTCACCG AGGTGGTCGT CTCCGCCGGC
CGGGCCACCG GAGTCAGGCT CGCCTCCGGG CGGAGCGTGG CGGCCGGACA GGTGGTGCTC
GCCGCCGGGG CACACACCAC CGGGCTGCTG GACTGCCTGC CGCCGGACGT CCGCGCCCTG
ATCCCGCCGG TGGTCGCCGG ACGGGGGGTC GCCCTGATGG TCCGCACCGT CACCGGGGCG
ATCCCCACCG GGGTGATCCG CACGCCCAAC CGGGCCTTCG CCTGCGGTCT GCACGTGGTC
CCGCGCGGCG ACGGCCTGAT CTACCTGGGG GCCACCAACG AGGTCGAACG GCACCCCGGC
ACCTCCGCCG CCATCGGCGA GCTCAACCTG CTCCTCGGTG GCACCCGGCA GTTGCGCGCC
GACCTGAACG CCGGCTGGGT CGAGCGCACC CTGATCGGCA ACCGGCCCAT CCCGCTCGAC
GGTTTCCCGC TGCTCGGTTC GACCGGTCTG GCCGGGCTGT GGCTCATGAC GGGGACCTAC
CGGGACGGGC TGCACCAGTC ACCGCTACTG GCCACCCACA TGGCGGACCT GATCCTCGAC
GGCCCGGGCG CCGTGGGGAT GGACCTGTCC GTCTTCACCC CGATCCGGCC ACCGATCCAG
GCGATGACCC GGGACGAGTG CCTGGCGACC GCCGTCCTGC ACACCATGGG GACCGCCTAC
GAGCACGACT GGAAGATCAT GGAGGACTGG CCTCCGATGA TCGAGGAGCA TTTCCGCTCC
GCCTTCACCA CCATGCTGGA CCGCATCGAC TCGGCGTTCG TGCCGCCCCC GGAGATGCTC
TTCTTCGCCG ACGAGGACAT CCACGAACTG TTGCTGTCGT ACTACGCGGC CCATGAGAAC
GCCGCGACGC CCGCCGAGGA TCGGTAA
|
|---|
| Protein sequence | MGDPSATCDV VVVGNGSVGM SLGLVLARRS LRVAVVGESA RPWAASAAAG AMNGCFGEVT
PQLLRSEVGR LKLEMDFRAT ALWTDWEQAL LEESDETAIR TAHGTTVILN TIGVHDIDTG
GYEAIRTALE EYKEPYEEVD PASLDWLDPV PTSRPLRAMH IPGEHAVDSP ALLTALETAI
RRRGGTLIDD LVTEVVVSAG RATGVRLASG RSVAAGQVVL AAGAHTTGLL DCLPPDVRAL
IPPVVAGRGV ALMVRTVTGA IPTGVIRTPN RAFACGLHVV PRGDGLIYLG ATNEVERHPG
TSAAIGELNL LLGGTRQLRA DLNAGWVERT LIGNRPIPLD GFPLLGSTGL AGLWLMTGTY
RDGLHQSPLL ATHMADLILD GPGAVGMDLS VFTPIRPPIQ AMTRDECLAT AVLHTMGTAY
EHDWKIMEDW PPMIEEHFRS AFTTMLDRID SAFVPPPEML FFADEDIHEL LLSYYAAHEN
AATPAEDR
|
|---|
| |