| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_3272 |
|---|
| Symbol | |
|---|
| ID | 3904443 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | - |
|---|
| Start bp | 3872773 |
|---|
| End bp | 3874287 |
|---|
| Gene Length | 1515 bp |
|---|
| Protein Length | 504 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 637880597 |
|---|
| Product | AMP-dependent synthetase and ligase |
|---|
| Protein accession | YP_482358 |
|---|
| Protein GI | 86741958 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1022] Long-chain acyl-CoA synthetases (AMP-forming) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.399263 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCAACA AACTCCTGGC GTCCACCCCG GACCGCGGGA CGCTGTACAT CACCAGGCTG
GCCGGCACCC GCGAGGTCCC GCTCGCCGAG GTCTGGCGAC TGTCCGGCCT GGTCGCGGCC
AGGCTGCGCG CCCGCGGCCT CGGCGCGGGC GACCGGATCG GCATCCTCGC CGCCAACAGC
CTCGAGTGGG TGGTGCTCGA CCTGGCTGCC CTGCGGCTCA AGGTCGAGAC CGCCGGCCTG
GAACCGGGCA AGTTCGCGCC TACCCGCGAA CTCATGGACC GCTACGGCCT CTCCCTCCTG
TTCACCGACC GGCCGTCCGA CGAATCCGGT GTCGAGCAAC TCGCGGCCCT GCTCGACGAC
CTGCTCGACG ACCTGCCCGA CGACCTGCCC GACGTGCCCC CGCCGCCGGT CAGGTACGCC
CCCGACGAGG TCACCACGAT CAAGTTCACC TCGGGAAGCA CCGGCACGCC CAAGGGCCTG
GGCGCCACCG TCGGCAGCAT CGACAGCTCG CTGGACGCCG TCCAGGGCAT GTTCGGCCAC
GGCCCCGGCG ACAATCTGCT GGTGTTTCTG CCGCTGTCGT TGCTTCAGCA GCGCTACTGG
GTGTATTCGG CGCTGCTGCA CGGCCACGAC GTCACGGTCT GCACCTACGA GGCGGCGTTT
GTCGCACTCA CCCAGGTACG GCCGACCGTC GTCATGGGCG TGCCCGGCTT CTTCGAAGGT
GCCCGCAGCC AGATCGAGCG CCGCACCCAG CGCACCGGCC GGGACCTCGC CGATGTGGCC
CGCGACCTGT TCGGCGACCG CATCCGCTAC CTCTGGACGG GCTCGGCGCC CGCCGATCCC
GCCACCCTTG CCTTCTTCAA CCGGCTCGGT CTGCCGATCT ACGAGGGCTA CGGCCTCAAC
GAGACGTGCA TCGTGGCCAA GAACCACCCG GGCGCGCACC GGGAGGGCAG CGTAGGCCGG
GTGCTGCCGG GCAAGCAGGT ACTCATCGAC GATGACGGGG TGATCAGCGT CCGTGCCCAG
CACCCGGTGA ACGGGCGGTA CGCCTACTGC GAGCCCGGCG ACTCCGAGCG GGTCTTCGGC
CCCGACGGCA CCGTGCGCAC CGGTGACCTC GGATACCTTG ACGCCGACGG CTTCCTGTTC
GTTCTCGGTC GTGCCGACGA CACGATCGTG TTGGACAACG GTAAGAAGAT CATCGTCAGG
CAGATCGAGG AGCATCTGAA GGCCAGCCCG GCCATCGCGG AGTGCGTGCT CTACTGCCCG
GCCCAGACCG AGCTGGTGGC GGTCGTCTCG CCGGCGTCGG TGCCGGCGGA CACCGCTGCC
ATCTCCGCAC AGCTCGCGGC CACCAACAAG GCGCTCGGCG GTGACCAGTA CATCCACCGG
GCCGTGGTGG CCGACGAGCC GTTCAGCATC GACAACGGCC TGCTCACATC TCAGTACAAA
CCCAAGCGGA AGCAGATCCG AGCGGTGTAC CTGCGCCAGC TCGGCGACCC GAGGAAGGGA
CTCCATGCTG CCTGA
|
|---|
| Protein sequence | MINKLLASTP DRGTLYITRL AGTREVPLAE VWRLSGLVAA RLRARGLGAG DRIGILAANS
LEWVVLDLAA LRLKVETAGL EPGKFAPTRE LMDRYGLSLL FTDRPSDESG VEQLAALLDD
LLDDLPDDLP DVPPPPVRYA PDEVTTIKFT SGSTGTPKGL GATVGSIDSS LDAVQGMFGH
GPGDNLLVFL PLSLLQQRYW VYSALLHGHD VTVCTYEAAF VALTQVRPTV VMGVPGFFEG
ARSQIERRTQ RTGRDLADVA RDLFGDRIRY LWTGSAPADP ATLAFFNRLG LPIYEGYGLN
ETCIVAKNHP GAHREGSVGR VLPGKQVLID DDGVISVRAQ HPVNGRYAYC EPGDSERVFG
PDGTVRTGDL GYLDADGFLF VLGRADDTIV LDNGKKIIVR QIEEHLKASP AIAECVLYCP
AQTELVAVVS PASVPADTAA ISAQLAATNK ALGGDQYIHR AVVADEPFSI DNGLLTSQYK
PKRKQIRAVY LRQLGDPRKG LHAA
|
|---|
| |