| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_3219 |
|---|
| Symbol | gltX |
|---|
| ID | 3906185 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | + |
|---|
| Start bp | 3813594 |
|---|
| End bp | 3815006 |
|---|
| Gene Length | 1413 bp |
|---|
| Protein Length | 470 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 637880543 |
|---|
| Product | glutamyl-tRNA synthetase |
|---|
| Protein accession | YP_482305 |
|---|
| Protein GI | 86741905 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0008] Glutamyl- and glutaminyl-tRNA synthetases |
|---|
| TIGRFAM ID | [TIGR00464] glutamyl-tRNA synthetase, bacterial family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.00410976 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.921134 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGATCTG GGCGGGTACG GGTTCGATTC GCGCCATCTC CCACCGGCAT CTTCCATGTG
GGTGGGGCGC GGTCGGCGCT GTTCAACTGG CTGGTCGCGC GGCGCGCCGG CGGCGACTTC
GTGCTGCGCG TCGAGGACAC CGACGCGTCC CGCAACCGGC CGGAGTGGAC CGACGGCATC
ATCAGCGCGC TGGACTGGCT CGGCATCAGC CCCGGCGGGT ACGAGGGTCC GGTGCTGCAG
TCGTCGCGCG CCGACCGGCA CCGGGCCGCG GCCGAACGGC TGCACGCCGA GGGTCTCGCC
TACTACTGCG ACTGCACCCG CGAGGCCCTG GCGGAACGCA CCGGCAACGC GCAGCGCGGC
TACGACGGAT TCTGCCGGGA CCGCGGGCTC GCCCCGGGTC CCGGCCGGGC GCTGCGCTTT
CGCACGCCGG ACGACGGCGT GACGATCGTC GAGGACCTCA TCCGCGGCAC GCCGGAGTTC
CCGAACGAGA CCATCGAGGA CTTCGTGGTC GCGCGGGCCG ACGGGTCGGC GGTGTTCCTG
CTCGCCAACG TCGTTGACGA CCTGGAGATG GGGATCACCC ACGTCATCCG GGGTGAGGAA
CACCTGTCGA ACACCCCTAA GCAGCAGCTG CTCTGGGCAG CGCTCGGCGC GGACGCGCCG
CCGGTGTGGG CGCACGTCCC GGTGATCGTC AACGAGAAGC GCCAGAAGCT GTCGAAGCGG
CGCGACAAGG TGGCGCTCGA GTCCTACCGG GACGAGGGAT ACCTGCCCGC CGCCATGAAG
AACTACCTGA TGCTGCTCGG TTGGGCCCCG CCCGGCGAGG ACGAGATCGT GCCCTGGGAA
ACGATCGAGT CCACCTTCGA CCTTGCCGAC GTGAAGCCAT CGCCGGCGTT CTTCGACGAG
AAGAAGCTCA AGGCGTTCAA CGGTGAGTAC ATCCGGCGGC TGAGCGTCGC GGAGTTCATC
GAGGCGGTCC GGCCCTGGCT CTCGGCGCCG GCCGCGCCGT GGGAGCCGGC CGCGTTCGAC
GCGGACGCGT TCGCAGCCCT CGCCCCCTTG GCGCAGAGCC GGGTCTCCGT GCTGTCGGAG
ATCGTGCCGA TGGTCGACTT CCTCTTCCTG CCGGAGGCAC CGATCGACGA CGCGGCCTGG
GCCAAGGCGA TGAAGGGGCC GGCGGCGGAA CTGCTCGCCG ACGTCCACGA CCTCTACGAC
AAGATCGAGT GGGAAGCCGA GACGTTGAAG GCCGGACTCA CCGAGGTGGG CGAGCGGCAC
GGTCTCAAGC TCGGCAAGGC GCAGGCACCG GTGCGGGTCG CCGTGACCGG GCGGAGCGTG
GGACTGCCCC TGTTCGAGTC GCTGGAGGCG CTCGGCCGGG AGACCACCCT GCGGCGGCTT
GCCGAAGCGC GGGAACGGCT CACCGGCGGC TGA
|
|---|
| Protein sequence | MGSGRVRVRF APSPTGIFHV GGARSALFNW LVARRAGGDF VLRVEDTDAS RNRPEWTDGI
ISALDWLGIS PGGYEGPVLQ SSRADRHRAA AERLHAEGLA YYCDCTREAL AERTGNAQRG
YDGFCRDRGL APGPGRALRF RTPDDGVTIV EDLIRGTPEF PNETIEDFVV ARADGSAVFL
LANVVDDLEM GITHVIRGEE HLSNTPKQQL LWAALGADAP PVWAHVPVIV NEKRQKLSKR
RDKVALESYR DEGYLPAAMK NYLMLLGWAP PGEDEIVPWE TIESTFDLAD VKPSPAFFDE
KKLKAFNGEY IRRLSVAEFI EAVRPWLSAP AAPWEPAAFD ADAFAALAPL AQSRVSVLSE
IVPMVDFLFL PEAPIDDAAW AKAMKGPAAE LLADVHDLYD KIEWEAETLK AGLTEVGERH
GLKLGKAQAP VRVAVTGRSV GLPLFESLEA LGRETTLRRL AEARERLTGG
|
|---|
| |