| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_3017 |
|---|
| Symbol | trpC |
|---|
| ID | 3904370 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | - |
|---|
| Start bp | 3583563 |
|---|
| End bp | 3584516 |
|---|
| Gene Length | 954 bp |
|---|
| Protein Length | 317 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 637880337 |
|---|
| Product | indole-3-glycerol-phosphate synthase |
|---|
| Protein accession | YP_482103 |
|---|
| Protein GI | 86741703 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0134] Indole-3-glycerol phosphate synthase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.145676 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGTGCGT TCGGGCCGCT ACCCGATTCC TCACGGGAAA GTCAACTATG TGGAGTCGTG
GATCGTAGCC GCATGTGGGG GGGCCGGGCA CACCGTGCCT GCCTGGCCTA CCATCGGCGG
CATGACCGCG ACAGTCGCGA GCGCGGGGCG ATGAGCGTTC TCACCGAGAT CCTCGACGGG
GTCGGGATCG ATCTTGCCGC CCGCGAGCAA CAGACCTCTC TGGCAGATCT CAAGCGGCGG
GTGGAACGCG TTCCCGACCC GAAGGACGCG CTTGCCGTCT TCCGGGACTC CCGGGTCTCG
GTGATTGCCG AGGTGAAGCG CCGTTCCCCC TCGAAGGGGG AGCTGGCGAC CATCACCGAC
CCCGCTGCCC TCGCCACCGA GTACGAGGCG GCGGGCGCCG CCGCGGTGAG TGTCCTGACC
GAGCAACGGC GCTTCAGCGG CTCCCTGGCC GACCTCGACG CCGTGCGTCG CGCGGTGGAC
GTCCCGCTGC TGCGCAAGGA CTTCATCGTG TCGCCCTACC AGGTCTTCGA GGCCCGGGCG
CACGGGGCGG ACATCGTCCT GCTCATCGTC GCGGCGCTGG ACCAGCCGCG GCTCGTCGGC
CTGCGCGAGC GGATCGAGTC CCTGGGCATG ACGGCGCTGG TCGAGGTGCA TGACGAGGCG
GAGATGGTGC GGGCGCTGGA CGCCGGCGCC CAACTGGTCG GGGTGAACGC CCGCGACCTG
CACACGCTGA AGATCGATCG GAGCACCTTC GCCCGGCTCG CGCCGATGGT GCCCCCGGAA
GTGCTCGCGG TCGCCGAGTC CGGCATCCGG GGGCCGCACG ATCTGCTCGC CTACGCCGCT
GCGGGGGCGG ACGTGGTACT GGTCGGCGAG GCAGCCGTCA CCGGCGATCC TCGTCAGACG
GTCGCCGATC TGGTGGCGGC CGGCGCGCAT CCGGCGGCCC GGGTCGGGCG CTGA
|
|---|
| Protein sequence | MGAFGPLPDS SRESQLCGVV DRSRMWGGRA HRACLAYHRR HDRDSRERGA MSVLTEILDG
VGIDLAAREQ QTSLADLKRR VERVPDPKDA LAVFRDSRVS VIAEVKRRSP SKGELATITD
PAALATEYEA AGAAAVSVLT EQRRFSGSLA DLDAVRRAVD VPLLRKDFIV SPYQVFEARA
HGADIVLLIV AALDQPRLVG LRERIESLGM TALVEVHDEA EMVRALDAGA QLVGVNARDL
HTLKIDRSTF ARLAPMVPPE VLAVAESGIR GPHDLLAYAA AGADVVLVGE AAVTGDPRQT
VADLVAAGAH PAARVGR
|
|---|
| |