| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_2957 |
|---|
| Symbol | |
|---|
| ID | 3903772 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | + |
|---|
| Start bp | 3505324 |
|---|
| End bp | 3507585 |
|---|
| Gene Length | 2262 bp |
|---|
| Protein Length | 753 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 637880278 |
|---|
| Product | DEAD/DEAH box helicase-like |
|---|
| Protein accession | YP_482044 |
|---|
| Protein GI | 86741644 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1201] Lhr-like helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0630659 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGATCTCCC GGACGTCCGG GGCCTCGGGG GCTTCCGGGG CCCCGGGGGC TTCCGGGGCT
TCCGGGGCCT CGGGCTTCGC CGCCCTCGAC CCGGCCGTCC AGTATCACGT CGTCAACAGT
CTGCGGTGGC CTGCCCTGCG CCCGTTGCAG GAGGCGGCGA TACGTCCGGT CCTCGACGGG
CATGACGTGC TGCTGCTGGC ACCGACCGCC GGTGGGAAAA CCGAGGCGGT GGCGCTGCCC
CTGCTGTCCC GGATGGCCGG GGAGAAATGG CGCGGGCTGT CGGTGCTGTA TGTGTGTCCG
CTGCGGGCGT TGCTGAACAA CCTCGAACCG CGGCTGGCCG CGATGTGCGA ATGGCTCGGC
CGGCGGGCCG CCGTCTGGCA TGGAGATGTC GCCGACTCGG TGCGCGGGCG GCTGGCCGTG
GATCCGCCGG ATCTTCTGCT GACCACCCCG GAGTCGATCG AGGCGATGCT CGTCTCCGCG
CGCGTCGATC ATCGATGGCT CTTCGCCGGC CTGCGGACGG TTGTCGTCGA CGAGGTCCAC
GCCTTCGCCG GTGACGACCG CGGTTGGCAT CTGCTGGGGG TGTTGGCCCG GTTACGCGGG
CTCGCCAACC GGGCGGTACA GCGGATTGGT TTGTCCGCAA CTGTCGGGAA CCCGGACGTA
CTGCTCGACT GGCTCGCGGA CGGATCCGCC CGGCCGCGCG CGGTCGTCCG GCCGAGTGAC
GTGACGGCCA CCACGGACGT GACGGCCACC ACGGACGCGA CAGCCACCAC GGACGCGACA
GCCACCACGG ACGCGACAGC CACCACGGAG GTCGGGATCG ACTACGTGGG CTCCCTGCGC
AACGCCGCCC TCGTGGTCGC CCGCCTTCAT CAGGGGATGA AGAGGCTGGT CTTCTGCGAT
TCCCGCAGCC AGGTCGAGGA GTTGACGGTT GCGCTGCGTG ACCTCGGGGT ACGGACGTAT
GTATCCCACT CGTCCCTGTC ACGGGATGAC CGGCGGCAGG CCGAGGCCGC CTTCGCGACA
TCCACCAACT GCGTCATCGT CGCCACTTCC ACCTTGGAGC TGGGGATCGA CGTCGGTGAC
CTGGACCGCG TCATCCAGAT CGGTGCCCCC GCCACGGTGA TCTCCTTCCT GCAACGCCTC
GGGCGGACCG GGCGGCGCCC CGGGACCCGA CGCAACACGC TGTTCCTGGC AACGTCGCAG
AACTCTCTGT GGCTCGCGGC GGCTATCACG CTGCTGTGGC AACGCGGATA CGTCGAGCCG
GTCGTCCCGC CCGTGCTTCC CCGTCACATC GTCGCCCAGC AGATCCTCGG ACTGGCCCTG
CAGGAAGGCC GCCTCGTCGA CCGCGACGTC TGGCAGTGGC TCGGCGGGCT TGCCCGGACT
CCGGGCGCGG TCGACGTACT GGCGCATCTG GCCCGCTCCG GGTTTGTCGT GCACACCGAC
GGGCTGGTAT CGATCGGCCC GCGGGCGGAG AAGGAATACG GGCGACGCTA CTTCCTCGAC
CTCACGTCAA CCTTCGCCGG CGAATCGATG GTGCAGGTCT GGTGGGGACG TAGCCTGCTC
GGCCAGCTGC CACCGATCGC GCTCGCGGCT CGACCGGAGC ACGGACCGCG GGTGGTTCTT
CTCGGCGGTC GTGCCTGGAA GGTGAATCAT GTCGACTGGC GGAGAAGACG AGTCCAGGTC
GAACCGAGCC GCTACCCAGG CCGGTCCCGG TGGAACGGCG GGGCCCGGGT CATGTCCTAT
CCGCTCGCCC AGGCTCACCT CGACGTCCTC GCCGGGCAAA CGGCCGGCAT CGAGATATCC
CGGCGGGCCG CCGACGCGTT GGACAAGCTC CGCGCGCAGC ATTCCTTTGT CAGTGTCAGT
GTCAGTGACG AGCCGGGCGA ACGCACCTAC CTCACCCGCG ACCCCGAGAA GCGGCCGATC
TGGTGGACAT TTGCCGGGTT CGCGGCCAAT TCGGCCCTCG CCTCGGGGCT CGGCGAGCTG
GTTGACGCTG ACGCGCCGGT CGGCGATCTC AGGCTGCGGC TTCGCCCGCA CGTCAACTCC
GCCGCGCTAC GGACAATGCT CGATGTTCGA CGTGACGACC TCGTTGACGC TCTTCCGGCC
ATCGATGTCG AGGCTGCCGA TGGGCTCAAG TTCTCCGCGG CGATTCCCCT CGAACTCGCG
ATCGAGACGC TAGCCGCACG CCTCACCGAT CCATCCGCCG TCCACGCGAC GCTGAAGGCA
ATCATCCGGG AGGAGACTGC GCCTCCGCCT GGGGGATGGT AG
|
|---|
| Protein sequence | MISRTSGASG ASGAPGASGA SGASGFAALD PAVQYHVVNS LRWPALRPLQ EAAIRPVLDG
HDVLLLAPTA GGKTEAVALP LLSRMAGEKW RGLSVLYVCP LRALLNNLEP RLAAMCEWLG
RRAAVWHGDV ADSVRGRLAV DPPDLLLTTP ESIEAMLVSA RVDHRWLFAG LRTVVVDEVH
AFAGDDRGWH LLGVLARLRG LANRAVQRIG LSATVGNPDV LLDWLADGSA RPRAVVRPSD
VTATTDVTAT TDATATTDAT ATTDATATTE VGIDYVGSLR NAALVVARLH QGMKRLVFCD
SRSQVEELTV ALRDLGVRTY VSHSSLSRDD RRQAEAAFAT STNCVIVATS TLELGIDVGD
LDRVIQIGAP ATVISFLQRL GRTGRRPGTR RNTLFLATSQ NSLWLAAAIT LLWQRGYVEP
VVPPVLPRHI VAQQILGLAL QEGRLVDRDV WQWLGGLART PGAVDVLAHL ARSGFVVHTD
GLVSIGPRAE KEYGRRYFLD LTSTFAGESM VQVWWGRSLL GQLPPIALAA RPEHGPRVVL
LGGRAWKVNH VDWRRRRVQV EPSRYPGRSR WNGGARVMSY PLAQAHLDVL AGQTAGIEIS
RRAADALDKL RAQHSFVSVS VSDEPGERTY LTRDPEKRPI WWTFAGFAAN SALASGLGEL
VDADAPVGDL RLRLRPHVNS AALRTMLDVR RDDLVDALPA IDVEAADGLK FSAAIPLELA
IETLAARLTD PSAVHATLKA IIREETAPPP GGW
|
|---|
| |