| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_2585 |
|---|
| Symbol | |
|---|
| ID | 3906491 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | + |
|---|
| Start bp | 3049097 |
|---|
| End bp | 3050149 |
|---|
| Gene Length | 1053 bp |
|---|
| Protein Length | 350 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 76% |
|---|
| IMG OID | 637879910 |
|---|
| Product | ApbE-like lipoprotein |
|---|
| Protein accession | YP_481676 |
|---|
| Protein GI | 86741276 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG1477] Membrane-associated lipoprotein involved in thiamine biosynthesis |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.501359 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.267301 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCGGCG CGGCAGCGGC GGTCGAGTGG TCGGTGTGGA GCACGACCGC CCGGCTCGTG
GTGACCGAGC CCGGCGCACT GGCCGCCGCC CGGGAGATCG TCGTGGACCA TCTCGCGGCC
GTTGACGAGG TCGCCAGTCG TTTCCGGGCC GATGCGGAGA TCAACCAGCT CGATCACGCC
GATGGGACGC CGCAACGGAT CAGCCCGCTA CTGGCAGACC TCGTCGGTGC GGCGCTCCTC
GCGGCCCGGC GCACCGACGG GGACGTAGAC CCGACCGTCG GCGGACCGCT CGCCGCTCTC
GGCTACGACC GGGACATCAC GTTGCTGCCG TCGGACGGTC CGCGGCTGCG GGTGGTGCAC
CGGCCGGCGC CGGGCTGGCA GCGGATCCGG CTGACCGGGA ACACACTGAC GCTGCCGGAC
GACGCGCGGC TCGACCTCGG AGCGACGGCG AAGGCGCAGG CCGCCGACCG CTGCGCCGCT
CTGGTCGCCG AACGGCTCGA CACCGGCGTG CTGGTCAGCC TCGGCGGGGA TGTCGCCACC
GCCGGGAACG CGCCGGAGGG CGGCTGGCGC ATTCGGGTCC AGGACCGCCC GGGCGAGCCC
GCCTGCACCA TCACCCTGGC CGCCGGGAGC GCGGTCGCGA CGTCCAGCAC CCTCGGGCGG
CGGTGGCGGC GCGGCGGGCG GCTCCTGCAC CACATCCTGG ATCCGCGCAC CTGCCAGCCC
GCGCCGGTGG TCTGGCGGAC CGCCACCGTG GCGGCCGCGA GCTGCCTCGA CGCGAACACG
GCGAGCACCG CCGCGATCGT CCGTGGTTCC GCGGCGGTGG GCTGGCTGCG CCGGCTCGGG
ATGCCGGCAC GGCTCGTCGC CACGGACGGC TCGATCGTCA CGACCGCTGG CTGGCCCGCC
CCGAGCCGGG CCAAGGTGGC CGGAGCCGGA GTGGCCGGAG CCGGAGTGGC CGGGGTCCGG
GTAGACCGGG CCGAGACGGC TCCGCCCGCC GAGGATGGAA CCCGAGTCAC GTCCGCTGGA
TCGGCGACAC GGCCGAGAGG TTCCGGCCGA TGA
|
|---|
| Protein sequence | MPGAAAAVEW SVWSTTARLV VTEPGALAAA REIVVDHLAA VDEVASRFRA DAEINQLDHA
DGTPQRISPL LADLVGAALL AARRTDGDVD PTVGGPLAAL GYDRDITLLP SDGPRLRVVH
RPAPGWQRIR LTGNTLTLPD DARLDLGATA KAQAADRCAA LVAERLDTGV LVSLGGDVAT
AGNAPEGGWR IRVQDRPGEP ACTITLAAGS AVATSSTLGR RWRRGGRLLH HILDPRTCQP
APVVWRTATV AAASCLDANT ASTAAIVRGS AAVGWLRRLG MPARLVATDG SIVTTAGWPA
PSRAKVAGAG VAGAGVAGVR VDRAETAPPA EDGTRVTSAG SATRPRGSGR
|
|---|
| |