| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_2367 |
|---|
| Symbol | |
|---|
| ID | 3904574 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | - |
|---|
| Start bp | 2741168 |
|---|
| End bp | 2743615 |
|---|
| Gene Length | 2448 bp |
|---|
| Protein Length | 815 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 637879697 |
|---|
| Product | transposase Tn3 |
|---|
| Protein accession | YP_481463 |
|---|
| Protein GI | 86741063 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG4644] Transposase and inactivated derivatives, TnpA family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.462352 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTGGCTGA TCCGCGCCCT GGTCGCGGTC GATGTCCCGG ACGACGACAC CGGTCAGGAG
TCGGTGCTGG CGTTGATCAA GTCGGTGCCG GGCAACGTGA GTCTGGACTC GATGCTGACC
GAGATCCGTA AGATGCGTGC GGTCCGCGCG GTCGACCTGC CCGACGGTCT GTTCGCCGAT
GTCGCCCCGC GGGTCGTCGC GGCGTGGCGG ACCCGGGCCG CGGTGGAGTC CCCGTCGCAC
CTGCGGGACC ATCCCGACCC GCTGATGCTG ACGTTGCTCG CGGCCTTGCT GCACCACCGG
CACGGGGAGA TCACGGACAC GCTGGTGGAG TTGCTGATCT CGACGGTGCA CCGGATCGGC
GCGCGGGCGG ACCGGAAGGT CACCGAGGAG CTGATCAACG CGTTCAAGCG GGTGACCGGC
AAGGAGAACA TCCTGTTCGC GATCGCTGAG GCCTCGCTCA GCAGTCCGGA CGAGCCGGTC
CGTGAGGTGG TGTTCCCGGC GGTCGCGGGT GGGGAGCAGA CGCTGCGGGA GCTGGTGGCC
GAGTTCAAGA CGAAGGGGCC GGTGTACCGG CGCACCGTGC GGACCACGCT GAAGGCGTCG
TACTCGAACC ACTACCGGCG CGGGCTGATC GCGCTGCTCG ACGTGTTGGA GTTCCGGTCG
AACAACGACA CCCACCGGCC GGTCCTCGAC GCCCTCGACC TGATCCGCCG ATACGCCGAC
ACCCGGCTGA CGTACCTCCC CGTCGGGGAG ACGGTCCCGA CGCACAAGGG GCTGCTGGGC
GACTGGAACG AGCTGGTGTT CACCGACCCG GCCAAGGGCC CGAAGCGGGT CGTCCGCGGC
GTCTACGAGA TCTGCACCTT CCAGGCCCTG TGCGACAGCC TGCGCTGCAA GGAGATCTGG
GTCGTCGGCG CGGAGAAGTG GCGCAACCCC GATGAAGACC TGCCAGCCGA CTTCGAGGCC
CAGCGCGCCA CGCACTACGC CGCCCTGCGT AAGCCGCTGG ACCCGACCGC CTTCATCGAC
CAGCTACGTG AGGAGATGCG GACCGAACTC GCGGCGCTCG ACACCGCGCT GCCGAAGCTG
CCCTGGCTGG AGATCGCCGA GCGGGGCAGG AACGGCCCGA TCCGGCTGAC CGACCTCGAC
GCCGCACCCG AACCGCGCAA CCTGCGCCGC CTCAAGGCCG AGGTGCGGAC CCGGTGGGGC
ACCGTCCCCC TGATCGACAT GCTCAAGGAG GCGGTCCTGC GCACCGGCTG CCTCGCGACC
GCGACCACCA TGGCCGGCCG TGGCGACCTG GCCCCCGAGG TGCTCGCCGA ACGGCTGATG
CTCGCGATCT ACGCCTACGG CACCAACACC GGCATCCGCG CGGTCGCCGG CAACGCGCAG
AACGGCCACA GCGAGGACGA CCTGCGCTAC GTGCGCCGCC GGTATCTGAC CGCCGAGCTC
GCCCGCACGG TCGCCGTCGA GATCGCCAAC GCCACCTTCG CCGCCCGGGC GCAGCAGGTC
TGGGGCGCCG GCTCCACCGC GGTGGCCAGC GACTCGACGC ACTTCGGCGC GTTCGACCAG
AACATCTTCA CCGAGTGGCA CTCCCGCTAC GGCGGCCGCG GCGTGCTGAT CTACTGGCAC
GTCGAACGTA AAAGCATGGC GATCCACTCT CAGCTGATCA GCTGCACCGC GTCCGAGGTC
GCCGCGATGG TCGAAGGCGC GATCCGGCAC GGTACGGCGA TGGAGGTCGA GGGCACCTAC
GTCGACTCCC ACGGCCAGTC CGAGATCGGC TTCGGGATCA CCCGTCTGCT CGGCTTCGAC
CTGCTCCCAC GTATCAAACG GATCAACAAG GTTCGGCTCT ACCGGCCGGC TGCTGGCGAA
CCGGACGCCT ACCCGCGGCT CGGTCCGGCG CTGACCCGGC CGATCCGCTG GGATGTCGTC
GCCGAACAGT ACGACCAGAT GATCAAATAT GCCACCGCGA TCCGGACCGG CACCGCCTCC
GCCGAGGCGA TCCTGCGCCG CTTCACCCGG ACCAACGCGA TCCACCCCAC CTACCAGGCC
ATGATCGAGG TCGGGCGGGC GCAGCGGACC CTGTTCGTCG CCCGCTACCT GCGCGACCGG
GACCTGCAAC GCGAGATCAA CGAAGGCCTC AACGTCGTCG AGTCCTGGAA CCGCGCCAAC
AGCGTCATCT TCTTCGGCAA GGGCGGCGAC ATCGCCACCA ACCGCCGCGA CGAACAGGAA
CTCTCCGTCC TCTGCCTACG GGTCCTGCAG GCCGCCCTGG TCTACGTCAA CACGCTCATG
GTCCAGGACG TCCTCGCCGA CGACGACTGG GCCGAGCAGC TCACCGACGC CGACCTGCGC
GGCCTGACCC CGTTATTCTG GACGCACGTC GCCCCGTACG GCGAGGTGAA ACTCGACATG
ACCAGCCGCC TGACACTCAG CGTGTCCGCC GCGGCGCCGC TGGTGTAG
|
|---|
| Protein sequence | MWLIRALVAV DVPDDDTGQE SVLALIKSVP GNVSLDSMLT EIRKMRAVRA VDLPDGLFAD
VAPRVVAAWR TRAAVESPSH LRDHPDPLML TLLAALLHHR HGEITDTLVE LLISTVHRIG
ARADRKVTEE LINAFKRVTG KENILFAIAE ASLSSPDEPV REVVFPAVAG GEQTLRELVA
EFKTKGPVYR RTVRTTLKAS YSNHYRRGLI ALLDVLEFRS NNDTHRPVLD ALDLIRRYAD
TRLTYLPVGE TVPTHKGLLG DWNELVFTDP AKGPKRVVRG VYEICTFQAL CDSLRCKEIW
VVGAEKWRNP DEDLPADFEA QRATHYAALR KPLDPTAFID QLREEMRTEL AALDTALPKL
PWLEIAERGR NGPIRLTDLD AAPEPRNLRR LKAEVRTRWG TVPLIDMLKE AVLRTGCLAT
ATTMAGRGDL APEVLAERLM LAIYAYGTNT GIRAVAGNAQ NGHSEDDLRY VRRRYLTAEL
ARTVAVEIAN ATFAARAQQV WGAGSTAVAS DSTHFGAFDQ NIFTEWHSRY GGRGVLIYWH
VERKSMAIHS QLISCTASEV AAMVEGAIRH GTAMEVEGTY VDSHGQSEIG FGITRLLGFD
LLPRIKRINK VRLYRPAAGE PDAYPRLGPA LTRPIRWDVV AEQYDQMIKY ATAIRTGTAS
AEAILRRFTR TNAIHPTYQA MIEVGRAQRT LFVARYLRDR DLQREINEGL NVVESWNRAN
SVIFFGKGGD IATNRRDEQE LSVLCLRVLQ AALVYVNTLM VQDVLADDDW AEQLTDADLR
GLTPLFWTHV APYGEVKLDM TSRLTLSVSA AAPLV
|
|---|
| |