| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_2245 |
|---|
| Symbol | |
|---|
| ID | 3905013 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | + |
|---|
| Start bp | 2618950 |
|---|
| End bp | 2620509 |
|---|
| Gene Length | 1560 bp |
|---|
| Protein Length | 519 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637879576 |
|---|
| Product | AMP-dependent synthetase and ligase |
|---|
| Protein accession | YP_481342 |
|---|
| Protein GI | 86740942 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.00923204 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0183444 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGATC TCACCGGGAA AAGTGACCTG ACCCTGAAGG CGGTGTTCGT CGACGCGTTG
GACCGGTTCG GTGCGCGTCC CGCCCTGCAC TATCAGGGGC GGACCTACGG GTACGGCGAG
ATCGTGGCCG CGGCGAACCA GCTCGCGCAC CGGCTGCGTG CGGCGGGGGT GGGGCCGGGG
GTGTCGGTGG CGTTGATGAT GTCCAACCGG CCCGAGTACA TCGTCGCGGA TCAGGCGATC
CTGCGGTGTG GCGCGGTCAA GGTGGCGCTC AACGACATGC TGTCGGCCAG CGAGATCGAC
TACATTCTGC GGGACAGCGA GGCCCGGGTC GTCCTCGCCG ATGCGGGGAT GCTCCCGGCT
GCGCTGCACT CCGCGCCGCC CCTGTTGGAG ACGGTCATCG CCGTCGCCGA CCCGGACGAC
TGCCCGGGCG GGGTGGTGGC GTGGCACGAC GCGCTGGCCG GGCAGCCGAC CACCGTGCCG
GAGGTCGACC CGACACCCAC CGACCCGGGG TTGATCGTCT ATACCGGGGG TACGACCGGT
CTGCCCAAAG GGGTGATGCA CACCCAGCGG AATCTCGCGC TCAATCTGTT CTCGCACGTG
ATGGAGATGG GGCTGCTCGA CGACGAGGTG CTGCTGTTGA TGTCGCCGCT GCCGCACAGC
GCGGGTTTCC TGCTGCAGGC CGGGATGCTC AAGGGGGCCC GGCACTTCCT GGAGACCAGG
TTCGACCCGG AGCTGGTGCT TGAGCGGATC ACCGCCGACC GGGTGACCTT CACGTTCATG
GTGCCTACCA TGATCTACCG GGTGCTTGAC CGGGCGGCGG GCCGCGCGTT GGACCTCAGC
TCGCTGCGGA CCATCCTGTA CGGTGCCGCG CCGATCACCC GGGAGCGGCT GGAGCAGGGC
CTGGAGGTGC TCGGCCCGGT GTTCATGCAG CTGTACGGGC AGTCGGAGGC GCCGAACTTC
ATCACCCGTC TTCGCCGTGA GGATCATCGT CTTGATCCTG ACGGGGAGCA TCGGCTGGCC
AGCTGTGGTC AGCCGGTCGT CATGGCCACG GTCAGGGTGG TCGACGAGGC TGGCCGGGAG
CTGCCCCGCG GTCAGGTCGG GGAGATCGTC GCCGCCACGC CGTACACGAT GGTGGGGTAT
CGGGGCCGGC CCGAGCAGAC CGCCAAGGCG CTGCGGGACG GGTGGTTGCA TACTGGGGAT
ATCGGGCGGA TGGATGCCGA GGGGTACGTC TATCTGCTGG ACCGCAAGAA CGATATGATC
ATCACCGGTG GGATGAACGT GTACAGCACG GAGGTGGAGA ACGCGGCGGC GGCCTGTCCT
GGGGTTGGGC AGGTCGCGGT CGTCGGGGTG CCGCATCCGG ACTGGGGTGA GGCGGTCGTG
GCGTTCGTCG TGCCCGATGA TACCGGTGCG TTCGACGAGG CCAAGCTGCT GGCGCACTGT
CGGGTCGAGC TTGCCCGGTA CAAGCAGCCC AAGGCCGTGC GGGTCGTCGA GGCCCTGCCG
ACCACCGTGT ACGGCAAGCT GGACAAGAAG GCGCTGCGGG CCGGCTGGCC CGGTTGGTGA
|
|---|
| Protein sequence | MSDLTGKSDL TLKAVFVDAL DRFGARPALH YQGRTYGYGE IVAAANQLAH RLRAAGVGPG
VSVALMMSNR PEYIVADQAI LRCGAVKVAL NDMLSASEID YILRDSEARV VLADAGMLPA
ALHSAPPLLE TVIAVADPDD CPGGVVAWHD ALAGQPTTVP EVDPTPTDPG LIVYTGGTTG
LPKGVMHTQR NLALNLFSHV MEMGLLDDEV LLLMSPLPHS AGFLLQAGML KGARHFLETR
FDPELVLERI TADRVTFTFM VPTMIYRVLD RAAGRALDLS SLRTILYGAA PITRERLEQG
LEVLGPVFMQ LYGQSEAPNF ITRLRREDHR LDPDGEHRLA SCGQPVVMAT VRVVDEAGRE
LPRGQVGEIV AATPYTMVGY RGRPEQTAKA LRDGWLHTGD IGRMDAEGYV YLLDRKNDMI
ITGGMNVYST EVENAAAACP GVGQVAVVGV PHPDWGEAVV AFVVPDDTGA FDEAKLLAHC
RVELARYKQP KAVRVVEALP TTVYGKLDKK ALRAGWPGW
|
|---|
| |