| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_2116 |
|---|
| Symbol | |
|---|
| ID | 3905643 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | + |
|---|
| Start bp | 2482443 |
|---|
| End bp | 2483465 |
|---|
| Gene Length | 1023 bp |
|---|
| Protein Length | 340 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 637879451 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_481217 |
|---|
| Protein GI | 86740817 |
|---|
| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0601] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.112325 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.169867 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTGGAG GCGACATGCA TGTCCTCGAG CAGGCGCCGG CGACGGAGGA TCGCGGCCCC
GCCCCCGAAC CCGCGCGCCG CCGGACCGTC CTGCGACACC TGCTGCGACA CCTGTTCTCC
GGTGCCGCGG TACTGCTGGG CGCCGCCACG CTCACCTTCA CCGCGCTGCA GCTGGCCCCG
GGCGATCCGG TGGCGGTCCT GCTAGGGCCG GGAACGTCCG CCTCGCCCCA GGTACGGGCG
GAAATCCAGG CAGAGTACGG TCTCGGCGAG CCGGCTCCGC TGAGGTACGT CCACTATCTC
GGCCATCTCG CCCGCGGCGA CCTGGGTACC TCGTATCAAC TCCAGCAGCC GGTCAGCGAG
GTGATCGTGG ATCAGCTGCG ACCCACGGCC GAACTCGCGG CCGCGGCGCT GGTGCTCGCG
GTCCTGACCG GGGTGGCCAT CGCCGTCGCG ACCGCGGGCC GCCGACCGGG ACTGCGCGCC
GCGGCGATGG CCTGGGAGTC ACTGGCCCTG TCCGTGCCCT CGTTCTGGGT GGGCATCGTG
CTGGTGAGCG TGTTCTCGTT CCAGTTGCGG ATCTTCCCCG GAGCGGGGGC CCAGGGCGCG
GCCAGCCTTG TGTTGCCGTC GGTGACCCTC GCCATGCCGG CCGCCGGCGC GCTTTCCCGG
ACGCTGCGGG AGGGACTGGA AGCCGCCCTC GCGCAGCCGT TCGCCGCCGC CGCTCGGGCC
CGCGGCCTGA GCCCCACCGG CGTCACAATG CGCCACGCCC TGCGCCACGC CGCCGCAAGC
GCGCTCAACC TCGGCGGCTG GCTCGCCGGG ACGCTGCTCG CCGGCACCGT CCTCGTCGAG
ACGGTCTTCG CCCGCCCGGG GCTCGGCGCG CTGACCGTGC ACGCCGTCAT CGACCGGGAC
ATGCCCGTGG TGATGGGGGT CGTCCTCACA TCGGCCCTGG TCTCGGCCGT CGTCTTCACC
GTCGTGGATC TGCTGCAACG CGTCCTCGAC CCGCGGCTTC GGATCGAGGT GATGGACCGG
TGA
|
|---|
| Protein sequence | MSGGDMHVLE QAPATEDRGP APEPARRRTV LRHLLRHLFS GAAVLLGAAT LTFTALQLAP
GDPVAVLLGP GTSASPQVRA EIQAEYGLGE PAPLRYVHYL GHLARGDLGT SYQLQQPVSE
VIVDQLRPTA ELAAAALVLA VLTGVAIAVA TAGRRPGLRA AAMAWESLAL SVPSFWVGIV
LVSVFSFQLR IFPGAGAQGA ASLVLPSVTL AMPAAGALSR TLREGLEAAL AQPFAAAARA
RGLSPTGVTM RHALRHAAAS ALNLGGWLAG TLLAGTVLVE TVFARPGLGA LTVHAVIDRD
MPVVMGVVLT SALVSAVVFT VVDLLQRVLD PRLRIEVMDR
|
|---|
| |