| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_1997 |
|---|
| Symbol | |
|---|
| ID | 3903705 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | + |
|---|
| Start bp | 2346588 |
|---|
| End bp | 2347889 |
|---|
| Gene Length | 1302 bp |
|---|
| Protein Length | 433 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 637879333 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_481100 |
|---|
| Protein GI | 86740700 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.314351 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGACTC GAGACGCCGC CGACGCACCT GAAGTCGCGT CCCCTGCTGG TCGTAGCCGG
CGGAACACGG CGCTGATTTT CGCCGCGACG CTCGCGTTCA CGCTGTCGCT GGCCGGGTCG
GCGTTGAAGA ACACGATTCA AGTGGACTTC TCGCCGATCG CAGTGGACCT TGGTGTCAGC
CGCGGGACGT TCGCCTGGTC GACGACGGTC TTCGCTGTGG TCATCGCGGT GGCGAGCCCG
GTCGTCGGGG TGCTGGCCGA TCGGTTCGGC GGCGCGGCCG TGCTGGTCAG CGGAACGGTG
CTCGCCGGTG CCGCCTTCCT GATCTGCGCG GCGGCGCCGG GGGTGTCGCT GTTCGCGTCC
GTCTACGGCG TGCTCGGCGC CTTCGCCTTC ACGATGCTCT CGTACGTTCC ATTGGGAAAG
CTTGCCAGCG AGCTGTTCAC CGCCCGCGGG GAGGGCCTGG CGTACGCGGT CATGACGAAC
GGCCCGGCTG TCGGGTTCAT CGTGCTGGTG CCGCTGTGGG TGTGGCTCGG CGCGTTCGCG
TCCTGGCGGG CCGTCTTCGT CGTCGCCGGT CTGTCGATGC TCCTCGTGCT GACCCCACTT
GCGCTGCTGC TGTATCGGCT GTCCGGCCAG GACGAGCCGG CGCCTACGGC GACGCCGGGC
ACACCCGGGA CCGCGGACGA CGCGCGGCTC GGCTTCGGGG ACCGGTTGCG GCTGGCAGCC
GCCAACCCTG TGTTCCTGGC GCTGACCGTC GCGTTCACCG GCTGTGGGAT CACGATGGCG
TTTGTCGACG TTCACCTGGT CACCGATCTG CACGAACATG GCATGAGCCC GGGTGTCGTC
AGTGGCACCC TCGCCATGCT GGGCGTCTTC GAGATCCTTG GCTCACTGGC CGCCGGCCGA
AGGTGTGACC GGGGCCGGGT CCGGCAGACC CTGCTTGTCG GTTACGCGCT GCGCGGCGGG
GCGATGGTGC TCGTCGCCTT CGACGCGACC GTAACCGCCT CGCTGGCCTT CGGGGTCATC
TTCGGGGCGA GCTATCTGGC GACGGTGGTC GCGACCACGC TGTGGATTGG CCGGGTGCTG
CCCGAGGGCG CCCGGGCCAC CGGCCTCGGT CTGCTGTGGA CGCTGCACAG CATCGGCGCC
GCTCTCTCCA GCCAGCTGGG CGCGCTGGTC GCCGACTCGT ACAACTCCTA TACGCAGGTC
GCGATGGGCG AGGCGCTGCT GGTCGGGGTG TCGTTCCTGC TGATCGCCCG GCTGCCCGCG
CCACGCCCGG CGGCCGTCCC CGCCGGCGCT TCCCGGCAAT GA
|
|---|
| Protein sequence | MTTRDAADAP EVASPAGRSR RNTALIFAAT LAFTLSLAGS ALKNTIQVDF SPIAVDLGVS
RGTFAWSTTV FAVVIAVASP VVGVLADRFG GAAVLVSGTV LAGAAFLICA AAPGVSLFAS
VYGVLGAFAF TMLSYVPLGK LASELFTARG EGLAYAVMTN GPAVGFIVLV PLWVWLGAFA
SWRAVFVVAG LSMLLVLTPL ALLLYRLSGQ DEPAPTATPG TPGTADDARL GFGDRLRLAA
ANPVFLALTV AFTGCGITMA FVDVHLVTDL HEHGMSPGVV SGTLAMLGVF EILGSLAAGR
RCDRGRVRQT LLVGYALRGG AMVLVAFDAT VTASLAFGVI FGASYLATVV ATTLWIGRVL
PEGARATGLG LLWTLHSIGA ALSSQLGALV ADSYNSYTQV AMGEALLVGV SFLLIARLPA
PRPAAVPAGA SRQ
|
|---|
| |