| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_1587 |
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| Symbol | |
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| ID | 3903722 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Frankia sp. CcI3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007777 |
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| Strand | - |
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| Start bp | 1903403 |
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| End bp | 1905283 |
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| Gene Length | 1881 bp |
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| Protein Length | 626 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637878924 |
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| Product | polysaccharide deacetylase |
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| Protein accession | YP_480692 |
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| Protein GI | 86740292 |
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| COG category | [G] Carbohydrate transport and metabolism
[R] General function prediction only |
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| COG ID | [COG0726] Predicted xylanase/chitin deacetylase
[COG1216] Predicted glycosyltransferases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0605374 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.689393 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGAATTCG CGATGAGCTA CCGTGAGAAA CCGAGCGTGG ACATCCCGGA CCATTCGGCG
GGGCAGCCCG CCCGTAATGG GCGTTCGGTC CGGTTCAGCA TTGTGATGCC GACATACAAC
CGCCGAGACG TGGTATTGCA GAGTATTGCG GAACTCAGGT ATCTCGATAT GCCGTGGCCC
TGCGAATTGA TCGTCGTCGT CGACGGTTCC ACGGATGGCA CTGAGAAGGC TCTCCAGGCT
GTCTCTCTGC CGTTCTCCAA GCGAATCCTG TGGCAGGAGA ACGCGGGCGC GGCCGCAGCG
AGAAACCGTG GCGCCGCGGG CGCGCTCGGC GAGTTCATCC TCTTTCTCGA CGACGACATG
GCGGCGGACC GGCGGCTCCT CGTCGAGCAT GAGCGGCTTC TCGCCGCCGG CGCCGACGCC
GTGGTCGGCC ACATCCCGAT GCACCCCGCC TCGCCTCCTA CGGTGCTCAC CTACGGAGTC
GACCGGTGGG CCCGGGCACG CCGCCGGAGG CTGCTGCGGT CGGACGGGCG GCTGACCGTC
GCGGACCTGC TCTCCGGGCA GGTGTCGATG CGGGCGTCGA CCTTCGCCAG GCTCGGCGGT
TTCGACACGG GTTTTACCGC CGGCGGCAGC TTCGGCGGTG AGGACACCGA CTTCCTCTAC
CGGCTGCTGC AGAGCGGTGC GCGGGTTCGA TTCGCCGCCG ACGCCGTCTC CTACCAGCGT
TACGTCGTTT CGCCCGAGGC GCACCTGAGG CAGTGGACGC AGGCCGGGCA GGCCGATGCC
GCGCTTTCCC GAAAACATCC GGGTCTCGGT GACCTGCTCT TTGCCCAGCA TGGCGGGAAG
ACGATCAGAG GAAGCCTCAC CAGGGCCGCG GCGGCGGCAC CGCCCTGGGC GTCCCGCGTC
CCGGCGGGTC TCGTGCTCGG AAGAGTCAGC GCCGGGAAGG TGGACCGGCC CACCAGATGG
ATGTTCCTGG GACTACGCGA CTGCTCCTAC TGGCGGGGAA CCCACCAGCG CGGCGGTCTC
CTGCACGCAC CGGACGTTGG CCTGCGGATC CTTGCCTATC ATGCGATAGA GGACGTGTCG
GATCCCCTGC TGAGTAGGTA TGCGGTTCCC CCGCCACAGT TCCGGGCCCA GCTGACAGCC
CTGCTGGGCG CCGGCTTCAC CTTCGTCGGG GTCGATGAAC TCCTGCATCA TCTCGACGGC
CGGCCCGCCC GGCATCAGTC GCTGGTCCTC ACCTTCGACG ACGCCTATTC GAGTCTGTTC
GAACACGCCG TGCCCGTCCT TCGGGAACTT GGTATTCCCG CGACGGTTTT CGTGGTCACG
AAAGAGATCG GCGGTTGGAA CAGGTGGGAT GCGGTGAACG GCGCCGCCAG GCTGCCGCTC
CTCGACGCGA GCCGGCTGCG TGCCCTTCAC CAGGAAGGCT GGGAAGTGGC GGCGCACTCC
CGCACTCACG GGCAGTTGAC GAGGATGAGT GGGGCCGGCC TGTGGGACGA TCTTTCCGCG
GCGCGCGGCG ACCTCGCGGC CATCGGGCTG CCCGTGCCAC GCCTGTTCGC CTATCCCTAC
GGGGAACATG ACGCGCGCGT GCGCATGATG GTGAAGAAGG CGGGATACGA CGCGGCGTTC
GCGCTGCAAA CTCGGCGCGC CTTCCCCACG GCTCAGGACC GCTATGCCCT GCCCAGGATC
GAGGTGGAGC GCCATACCCG CGTTGATGCG CTCGTCGAGA CGGTGCGCAG ATCGCAGGTT
TACCGACGTC CCGACATCCG TCCCGACATC GAGCGGGAAC TGGGTGGGGC ATTGCGTCGA
GTTCTCCCGG TCCAACGGAC GATCCGCGGA CACACCAAAG ATCACGAGGC CGAAGATCAC
GAGGCGAGGA GCGTCGGATG A
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| Protein sequence | MEFAMSYREK PSVDIPDHSA GQPARNGRSV RFSIVMPTYN RRDVVLQSIA ELRYLDMPWP
CELIVVVDGS TDGTEKALQA VSLPFSKRIL WQENAGAAAA RNRGAAGALG EFILFLDDDM
AADRRLLVEH ERLLAAGADA VVGHIPMHPA SPPTVLTYGV DRWARARRRR LLRSDGRLTV
ADLLSGQVSM RASTFARLGG FDTGFTAGGS FGGEDTDFLY RLLQSGARVR FAADAVSYQR
YVVSPEAHLR QWTQAGQADA ALSRKHPGLG DLLFAQHGGK TIRGSLTRAA AAAPPWASRV
PAGLVLGRVS AGKVDRPTRW MFLGLRDCSY WRGTHQRGGL LHAPDVGLRI LAYHAIEDVS
DPLLSRYAVP PPQFRAQLTA LLGAGFTFVG VDELLHHLDG RPARHQSLVL TFDDAYSSLF
EHAVPVLREL GIPATVFVVT KEIGGWNRWD AVNGAARLPL LDASRLRALH QEGWEVAAHS
RTHGQLTRMS GAGLWDDLSA ARGDLAAIGL PVPRLFAYPY GEHDARVRMM VKKAGYDAAF
ALQTRRAFPT AQDRYALPRI EVERHTRVDA LVETVRRSQV YRRPDIRPDI ERELGGALRR
VLPVQRTIRG HTKDHEAEDH EARSVG
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