| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_1426 |
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| Symbol | |
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| ID | 3903157 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Frankia sp. CcI3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007777 |
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| Strand | + |
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| Start bp | 1719111 |
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| End bp | 1720052 |
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| Gene Length | 942 bp |
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| Protein Length | 313 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 637878763 |
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| Product | ribosomal large subunit pseudouridine synthase D |
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| Protein accession | YP_480532 |
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| Protein GI | 86740132 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.128873 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.0393122 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGACCATCA CGGGCGGTGA CCTGCGGTCC CTGCCGGTCC CGGACGGGCT CGACGGCGTC
CGTCTCGACG CGGCGATCGC GAGGATGTTC GGGCTGTCGC GGACCGTGGC CGCCGCGCTC
GTCGACGACG GCCAGGCGAG CCTCGACGGG AAGGTCCGGG GCCGGTCCGA CCGGGTCAGC
GGCGGTGCCT GGCTGGAGGT CCGGCTGCCC GCTCCGCCGC GTCCGGTGGC GGTGGAACCC
ACGCCGGTCG AGGCTCTCGG CATTCTCTAC GACGACGACG ACATCATCGT GGTGGACAAG
CCGGTCGGGG TCGCCGTCCA TCCGGCGCCC GGCTTCACCG GACCGACCGT GATCGGGGCG
TTGGCCGCCG CGGGATACCG CATTTCCACC TCGGGCGCGG CCGAGCGTCA GGGGGTGGTG
CACCGTCTCG ACGTCGGTAC CACCGGGGTG ATGGTGGTCG CCAAGAGCGA GCGCGCATAT
ACCCTGCTGA AACGGGCGTT TCGTGACCGT ACGGTGGACA AGCGCTACCG GGCCGTGGTG
CAGGGCCATC CCGATCCGCT GCGGGGCACC GTGGACGCCC CGATCGACCG GCATCCGCGC
CGGCCGGGGC TGTTCGCCGT CGTCGCGGAC GGCAAGCCGA GTATCACCCA CTACGACCTC
CAGGAGGCGT TCCGGGCCGC CTCCCTGCTG TCCGTGCGAT TGGAGACCGG GCGCACCCAC
CAGATCCGGG TGCACATGTC CGCCCTGCGG CACCCGTGTG TCGGGGATCT CGCCTACGGG
GCCGATCCCA CGCTCGCCGA GCGGCTCGGC CTGACCCGCC AGTGGCTGCA CGCGGCGCGG
CTGTCCTTCG ATCATCCCGG TCACGGCGGA CGGGTCGAGT TCACCAGTCC GGACCCGGCT
GACCTGGCCG AGGCGGTGGA ACGGCTGCGG GACCAGCCAT GA
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| Protein sequence | MTITGGDLRS LPVPDGLDGV RLDAAIARMF GLSRTVAAAL VDDGQASLDG KVRGRSDRVS
GGAWLEVRLP APPRPVAVEP TPVEALGILY DDDDIIVVDK PVGVAVHPAP GFTGPTVIGA
LAAAGYRIST SGAAERQGVV HRLDVGTTGV MVVAKSERAY TLLKRAFRDR TVDKRYRAVV
QGHPDPLRGT VDAPIDRHPR RPGLFAVVAD GKPSITHYDL QEAFRAASLL SVRLETGRTH
QIRVHMSALR HPCVGDLAYG ADPTLAERLG LTRQWLHAAR LSFDHPGHGG RVEFTSPDPA
DLAEAVERLR DQP
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