| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_1383 |
|---|
| Symbol | |
|---|
| ID | 3906585 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | - |
|---|
| Start bp | 1662354 |
|---|
| End bp | 1663373 |
|---|
| Gene Length | 1020 bp |
|---|
| Protein Length | 339 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 637878720 |
|---|
| Product | phytoene synthase |
|---|
| Protein accession | YP_480489 |
|---|
| Protein GI | 86740089 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1562] Phytoene/squalene synthetase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.244204 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.00693002 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGGCTACGC TGACTAACGT GGGGCAGCTC GACGCGGCCG GAATCATCGA TCCTCGACTA
CGTTCCTCCT ATGCGCGGGC CCGGGCGCTC AATGCCGCCC ACGGCCGCAC GTACTACCTG
GCCACCCTGC TGCTGCCAGG GTGGAAGCGG CCCCACGTCC ACGCGCTGTA CGGCTTCGCC
CGCTACGCGG ACGAGATCGT CGACGATCTC GACTCCACGC TGACCGAGGC CGAGCGGGCG
CGCTGGCTGC ACGAGTGGGG CAGCCGGTTC CTTGCGGCGC TACGGGCGGG GACACCCGCC
GTTGACGTCG GCACCGAGAT GGCCGGCACC GGGAGGGACC GGCACCGCGC GGAGGTCTCG
GTGCTGCCCG CGGTGGTCGA CACCATTCAC CGCTTCAAGA TCGATCCGGA CCACTTCGCG
GCGTTCCTGG CCTCGATGGC GATGGACCTC ACCGTGACGG AGTACGCGAC CTGGGACGAG
CTGACCGTCT ACATGCACGG ATCGGCCGCG GTGATCGGCC TGCAGATGGT GCCGATCCTC
GAGCCAGTGG ACGACAGCGC CCTGCCCTAT GCCCGCGACC TGGGGATGGC CTTCCAGCTC
GCCAACTTCA TCCGCGACGT CGGCGAGGAT CTGCGGCGCG GCCGCGTCTA TCTGCCCCGG
ACTTCGCTGG ACCTGTTCGG GGTCACCCGG GAGCAGCTGG CCGCCGGCGT CGTTGACGGG
CCGGTCCGCC GGCTGCTGGC CTTCGAGATC AGCCGGGCGC GGGAGCTGTT CCGCGCCGCC
GAGCCCGGCA TCCGCCTGCT GCACCCAACC TCACGCGACT GCCTGCGGAC GGCGTTCGTC
CTCTACCGGG GCATCCTCGA CGAGGTCGAG CGCGCCGACT ACCGGGTGCT CGAACGCCGC
GTGTCAGTCG GGCCCCCGCG CCGGCTGGCG GTCGCCGGAC CCGCCCTGGT CCGGGCCGTC
CGGGCGCGTC GCGGCCAGGG CCACGGGATG CCTCAGATCA GCTCACGGCC CCCCAGGTAG
|
|---|
| Protein sequence | MATLTNVGQL DAAGIIDPRL RSSYARARAL NAAHGRTYYL ATLLLPGWKR PHVHALYGFA
RYADEIVDDL DSTLTEAERA RWLHEWGSRF LAALRAGTPA VDVGTEMAGT GRDRHRAEVS
VLPAVVDTIH RFKIDPDHFA AFLASMAMDL TVTEYATWDE LTVYMHGSAA VIGLQMVPIL
EPVDDSALPY ARDLGMAFQL ANFIRDVGED LRRGRVYLPR TSLDLFGVTR EQLAAGVVDG
PVRRLLAFEI SRARELFRAA EPGIRLLHPT SRDCLRTAFV LYRGILDEVE RADYRVLERR
VSVGPPRRLA VAGPALVRAV RARRGQGHGM PQISSRPPR
|
|---|
| |