| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_1372 |
|---|
| Symbol | |
|---|
| ID | 3906574 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | + |
|---|
| Start bp | 1646562 |
|---|
| End bp | 1647029 |
|---|
| Gene Length | 468 bp |
|---|
| Protein Length | 155 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 637878709 |
|---|
| Product | protein translocase subunit yajC |
|---|
| Protein accession | YP_480478 |
|---|
| Protein GI | 86740078 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1862] Preprotein translocase subunit YajC |
|---|
| TIGRFAM ID | [TIGR00739] preprotein translocase, YajC subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.0718245 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCACGTAC TCGTGGCAGC TTCGGTGGCG GCCGGCAAGG ACGGGGGCAG TTCGATCAGC
GGGCTTCTGT TCCCGCTGAT CCTCATCCTG GTGATCGTCT ACTTCTTCTC GATGCAGCGG
CGCCGCGCCA AGGCGCAACA GCAGCAGATA TCGCGGATCG TTCCCGGTAC CCTGGTGATG
ACCACCGCTG GTCTCTACGC CACGGTCGTC GAGATGGAGG ACGGCGACCT CCTGCTGGAG
GTTGCGCCCG ATGTCGTCTG CCGCTTCTCG CGCAGCGCGG TCGCTCGGGT GATCAGTACG
CCCGGCGGAG CCGGGGACGG CGGGGAGTCC TCCGGGGAAC CCCGGTCACA CGACGACGGT
TCCGACGGCC CCGGTGGCGC CGAGGCGTCG CATCCCGGCG GTGGCCTCCC CGGTGGGGAC
GGCGGCACGG GCGGTGAAAC GACACACCCG CCCCGCAAGG AGCTGTGA
|
|---|
| Protein sequence | MHVLVAASVA AGKDGGSSIS GLLFPLILIL VIVYFFSMQR RRAKAQQQQI SRIVPGTLVM
TTAGLYATVV EMEDGDLLLE VAPDVVCRFS RSAVARVIST PGGAGDGGES SGEPRSHDDG
SDGPGGAEAS HPGGGLPGGD GGTGGETTHP PRKEL
|
|---|
| |