Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Francci3_1244 |
Symbol | |
ID | 3903543 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Frankia sp. CcI3 |
Kingdom | Bacteria |
Replicon accession | NC_007777 |
Strand | + |
Start bp | 1488854 |
End bp | 1490533 |
Gene Length | 1680 bp |
Protein Length | 559 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 637878578 |
Product | EmrB/QacA family drug resistance transporter |
Protein accession | YP_480351 |
Protein GI | 86739951 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.198291 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCAGCGC AGACCCAGGC GCCCGCCGCG GCGGGCGGGG GCATGACGGG CGGTAGCGGA GATCGGCTCG ATCCGGCGCT GATCCGTCTC GCCGGGATCG TCCTCGTCGG TGCGGTCGTG GTGCAGCTCG ATGCGACGAT CACCTCCGTG GCGATCAACA CCCTCGCCCG ATCCTTCAAC GTCGGAATCT CGACAATCCA GTGGGTGAGT ACCGGTTACC TGCTCGCGCT CGCCATGGTG ATCCCGGTGA CCGGCTGGTC AGCCGAGCGG TTCGGCGCCA AGCGGATGTG GCTGCTGTCG CTGGTCCTGT TCCTCGTCGG CTCGGCGCTG TGTGGGGCGG CATGGTCGGC CGGCAGTCTC ATCGCCTTCC GGATCGTGCA GGGCCTCGGC GGCGGCCTGC TTCTGCCTCT GATGCAGACG ATCATCGCGC AGGCGGCCGG GCCGGAACGG CTGGGCCGCC TGATGGCGGC GGTGGGGGTG CCCGCGCTGG TCACTCCCGT GCTCGGGCCG GTCATCGGCG GGCTGATCGT CGACGATCTC GACTGGCGTT GGATCTTTTT CATCAACGTG CCGGTCTGCC TGATCGGGCT GGTCCTGGCC TGGCTGGGGA TGCCGGATGT GCGGACTCCC GGGCGGCATC GCTTCGACGC TCTCGGGTTC GCGTTGCTGT CCCCGGGGCT GGCCGCGATC GTCTACGGCT TCTCCGTGGC CGGCCGGCAG GGTGACTTCA CGGGTGTGCG GGTGATCGTG CCGCTGGCCC TCGGCGCGGC CCTGCTCGTT CTGTTCACGG TGCATGCCCT GCGGACCGCC GTCGAACCGA TCATCGACCT GCGGCTGTTC CGGTCCCGGG CCTTCGCCGG TTCATCGGGG ATGATGTTCC TGTTCGGGAT CTCGCTGTTC GGGGCGATGT TCCTGCTGCC CCTGTACGAG CAGCAGGCCC GTGGCCGCAG CGCCGCCGCC GCCGGCCTGC TCCTCGCCCC GCAGGGGTTG GGGATGATGA TCGCCCTGAT TGTGCTGGGC CGGGTGGCGG ACCGGCGCAG CCCGCGGTTG TTCGTTCTGG TCGGCCTTCT GCTCAGCGCG CTGGGATCGG TTGCGTATAC ACAGGTCGCC GCCGACACCA GCGAGGTGCT GCTCGGGGTC TCCCTGACGG TCCGCGGCAT CGGGCTGGCC ATGGCGCTCA TCCCGGTGAT GTCCTCTGCC TACCACGGGC TGCGCCGGGA GGAGATTCCG CGCGCCACCT CCGCGGGGCG GATCTTCCAG CAGATCGGCG GCTCACTCGG GACGGCCATC CTCGCCGTGG TGCTGTCCCA CCAGATCACC GGCCGACCCG CCGGGACCGG ACCCGCCGAT CCGGTGGCGC TGGCCGGCGC CTTCGGTACG GCGTTCTGGT GGACCCTCGG GTCCACGGTC CTCGCCGCAC CGTTCGCCTT TCTGCTGCCG GGACGGCCAG CCGGCGCGGA GCAGCCCGCC CCGTCAGGCC CGCCGGTCGA GCTCCCGCGG CCGGCCGGGG CCGTCCCCAC CCGTCGCCGG TCGGGCGACC ACGGGGAGCT GAAGAGCCAT GAAACTTCTC CCGGCCGCCG CGCCGCCGTC TCAGGGGCCG AGGGGAACCG CCACGATGGT CGGGAGTACC GGGTCCCCGC TCCCCGTGGC GGCCGAGGCG GTGGCCAGTG GCGCGGATGA
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Protein sequence | MAAQTQAPAA AGGGMTGGSG DRLDPALIRL AGIVLVGAVV VQLDATITSV AINTLARSFN VGISTIQWVS TGYLLALAMV IPVTGWSAER FGAKRMWLLS LVLFLVGSAL CGAAWSAGSL IAFRIVQGLG GGLLLPLMQT IIAQAAGPER LGRLMAAVGV PALVTPVLGP VIGGLIVDDL DWRWIFFINV PVCLIGLVLA WLGMPDVRTP GRHRFDALGF ALLSPGLAAI VYGFSVAGRQ GDFTGVRVIV PLALGAALLV LFTVHALRTA VEPIIDLRLF RSRAFAGSSG MMFLFGISLF GAMFLLPLYE QQARGRSAAA AGLLLAPQGL GMMIALIVLG RVADRRSPRL FVLVGLLLSA LGSVAYTQVA ADTSEVLLGV SLTVRGIGLA MALIPVMSSA YHGLRREEIP RATSAGRIFQ QIGGSLGTAI LAVVLSHQIT GRPAGTGPAD PVALAGAFGT AFWWTLGSTV LAAPFAFLLP GRPAGAEQPA PSGPPVELPR PAGAVPTRRR SGDHGELKSH ETSPGRRAAV SGAEGNRHDG REYRVPAPRG GRGGGQWRG
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