| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_1178 |
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| Symbol | |
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| ID | 3905289 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Frankia sp. CcI3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007777 |
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| Strand | - |
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| Start bp | 1406876 |
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| End bp | 1409728 |
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| Gene Length | 2853 bp |
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| Protein Length | 950 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 637878510 |
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| Product | AMP-dependent synthetase and ligase |
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| Protein accession | YP_480286 |
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| Protein GI | 86739886 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II
[COG3319] Thioesterase domains of type I polyketide synthases or non-ribosomal peptide synthetases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.0144635 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGCTTTGA ACGAAAGCGG TCGGCGCGCG TCCCTTGCGG TCGCGACGCC TGAAGGTGGC
GCGTTCTTCC CGGCGTTGCA CTTCGACGAC CTGCCGGCCT CGGTGGTCAG CCGGTTCCGG
GAGGTCGCCA CGCACCTGCC CGATACACCC GCGCTGGTCT CGCCCGGCGT CGTCATGACC
TTCGCCGAGG CTGATCGCCG GACCGATGAC ATCGCGATGG CGGTCCTCGG CCGCCTCGAC
GCGAACGAGG ACGGTCCGGT CGCGACCCTG CTGCCGCACA GCGTGGCCGG CCTGCTGGGC
GTACTGGGCG TACTGAAAAC CGGACGCCCG GTCGTCCCGC TGGATCCGAT GGTGCCCGCC
GAGCGGATGG CGCAGATCGT TCGGCAGGCC GGCTGCGTGG CCCTGCTGAC CGACCTGGGC
GACAGTTCCG TGGCCCGCTC GACGGTGGGC CTGCGGCCGG TGGGGACCAA CGGTTCGAAC
GCCACGGCCG AATCCAGCGT GAATCCGGAC GCCCTGCTCG CCGCGCTGGC CGGGGGCGGC
CCCCGCCACG TCCTGGACCT CGCCGCGGCG GCCGCGGACG GCGCCCGGTG GATCGCGGCA
AACGGCGCGG ACGCGGTCTG GTGGCCGCAG CCGCTGGTCG ACGATCCGGC CTGCATCGTG
TTCACCTCCG GTTCGACCGG CGCGCCTAAG GGCGTGGTGT GGACAAACGG CACGTTCCTG
TGCGACGCCT ACGCCGGCGC CGAACGTCTC GGTTTCGCGC CGGGCGACCG GCTGGCCCTC
GTGCTGCCGT ACTCGTTCGC CGCCGGCATC ACCGTGGTGG TGTTCGGTCT ACTCAACGGG
GCCGGGGTGT ATGCCTATGA TCCACGGGCG GCGGGCCTGA GCGGCCTCGC CGACTGGATC
TCCTCGCAGC ACCTGACCGC GCTGCAGACC ACTCCGTCTC TGCTGCGCTC CCTCGTCGGC
TCGCTCGAAC CGGACCAGGT CCTCGCCGAC CTGCGGATCG TGACCACGTG CGGGGAGGCC
GTCTACGGAC GCGACATCAC GGCGCTGCGG CCGCACGTGC CACCGGCGTG TACCTACGTG
AACTGGTCCG GTGCCTCCGA GATCGCATCC CTCGGCTTCT TCGAGGTCCC GCCGGGCACG
CAGCCGCCCG CGGGCACGGT ACCCGCCGGC CTGCCGGCGA CCGGCAAGGA GGTGGTACTG
CGTCGCGAGG ACGGCACGCC CGCCGATCCC GGCGAGGTAG GCGACGTGGA GGTCACCTCG
GCCTACCTGT CGGCCGGGTA CTGGGGGAAC GCGGAGATGA CGACGTCCCG CTTCACCCCG
CTCACCGATG GCCGGACCAC CTGCCGGACC GGCGACGTCG GCCGGTTCGA ACCCAACGGC
ACGCTGATCC TGCTCGGCCG CCGGGACGCG GCGGTGAAGA TCCGCGGCTA TCTCGTCGAA
CCGAGCGAGG TGGAGGCGGC GCTGCTGAGC TCCGCGGAGA TCGCCGAGGC GGTCGTCACC
GCCGTCGCGC ATCCTTCGGC GCGGAACCGG CTGGTCGCCT ATGTCGTGCC GGCGGTACAC
GGCAACACCC TGTCCCCGGT CCGAATCCGG CGGAGGCTAC GCGAGAAGCT GCCGGTCTGG
ATGGTCCCGA CGACGATCAT CCCCCTGGCG GAACTGCCCC GCAACGAACG CGGCAAGGTG
GACCGGGGCG CGCTGCCGCC CCCGCCGGAG GCCCCGGCCG TCTCCGCCCG GCCGAGAACG
CAGTGGGAGA TCGTCGTCGC CGACATCTGG ACGCGGGTCC TCGATCTCGA GGAGGTCGGC
ATCGGGGACG ACTTCATGGA GCTCGGCGGC GACTCCCTGG CCGCGAACGA GCTGCTCACC
CTGGTCGCGG AGAAGCTCGG GATCACCATG CCGTCATCGG CGCTGGTCGA CGCGCCGACG
CTGGGCGAGT TCGCCCGCGC GCTGTCACTC GCGCAGCAGT CGGGTCCGCG ACACCCCACC
GTCGTCCCCC TGCGCACCAC CGGCTCGCGG CCGCCGCTGT TCTGCTTCGC CGGGGCCGGC
GCGCTCGCCC TCGGCTTCCA CTCACTGGCC CGCCGCCTCG GCGACGACCA GCCGGTCTAC
GCCTTCCAGG CGCATGGGCT GGAGCGGCGG GGCGTCCCGG ACTGGAGCGT CGCGCGGACC
GCCCGCCGCC ACCTGGAGAT CATCCGCGTC CTGGCTCCCC GGGGTCCCTA CCTGCTCGCC
GGGCACTCGC TGGGTGGCCT GATCGCCATG GAGATCGCCC AGCAGCTCGC CGCCGCGGGA
GAGGAGGTCG GTTTCCTGTC CATCATGGAC ACCTACCTGC CGGCCTCGCT GCGGATCGAG
TCGGCCGGGT CGGGTAGCGC CGCCGGGTCG GGCGGCGCCG CCGGGTCGTC GAAGGCAGCC
GAGGACCACG CGCGCGGTTA CCGCGGCCGG CTGGCGCGGT TCACCCAGAA GCTGCTACCG
GAACAGCGGG CGAACTTCAC CAGCAAGGCG ACCCTCAAGA AAATGGTGCA GATTCCGCTC
ACCGGGGTCG TACAGTTCGG CGGGCTCGAG CAGTTCGACG TCTTCTTCAA CCACGGGCGG
CTTCTCGAAC GTTTCTACCG ACCGCGGCCA TGGCCCGGCC GGACCCTCGT GTACCGATCG
GCGGAGAATC CGGACCCGGA GGACGCATGG TCAGCATTCC TCACCGGGAG CCATGACACC
CATTTCGTTC CGTGTGAGCA TTTCTACCTG CTCCGCGAAC CGCACATCAT CAAGATCTCG
GAGCATTTCC GGGCCGAGAT CGACCGGGTG GTCGCCGGGC TGACGAAGAC AGGTCGCCGG
GCTGACGAAG GCAGGCTGAC CGCGACGGAC TGA
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| Protein sequence | MALNESGRRA SLAVATPEGG AFFPALHFDD LPASVVSRFR EVATHLPDTP ALVSPGVVMT
FAEADRRTDD IAMAVLGRLD ANEDGPVATL LPHSVAGLLG VLGVLKTGRP VVPLDPMVPA
ERMAQIVRQA GCVALLTDLG DSSVARSTVG LRPVGTNGSN ATAESSVNPD ALLAALAGGG
PRHVLDLAAA AADGARWIAA NGADAVWWPQ PLVDDPACIV FTSGSTGAPK GVVWTNGTFL
CDAYAGAERL GFAPGDRLAL VLPYSFAAGI TVVVFGLLNG AGVYAYDPRA AGLSGLADWI
SSQHLTALQT TPSLLRSLVG SLEPDQVLAD LRIVTTCGEA VYGRDITALR PHVPPACTYV
NWSGASEIAS LGFFEVPPGT QPPAGTVPAG LPATGKEVVL RREDGTPADP GEVGDVEVTS
AYLSAGYWGN AEMTTSRFTP LTDGRTTCRT GDVGRFEPNG TLILLGRRDA AVKIRGYLVE
PSEVEAALLS SAEIAEAVVT AVAHPSARNR LVAYVVPAVH GNTLSPVRIR RRLREKLPVW
MVPTTIIPLA ELPRNERGKV DRGALPPPPE APAVSARPRT QWEIVVADIW TRVLDLEEVG
IGDDFMELGG DSLAANELLT LVAEKLGITM PSSALVDAPT LGEFARALSL AQQSGPRHPT
VVPLRTTGSR PPLFCFAGAG ALALGFHSLA RRLGDDQPVY AFQAHGLERR GVPDWSVART
ARRHLEIIRV LAPRGPYLLA GHSLGGLIAM EIAQQLAAAG EEVGFLSIMD TYLPASLRIE
SAGSGSAAGS GGAAGSSKAA EDHARGYRGR LARFTQKLLP EQRANFTSKA TLKKMVQIPL
TGVVQFGGLE QFDVFFNHGR LLERFYRPRP WPGRTLVYRS AENPDPEDAW SAFLTGSHDT
HFVPCEHFYL LREPHIIKIS EHFRAEIDRV VAGLTKTGRR ADEGRLTATD
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