| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_1079 |
|---|
| Symbol | |
|---|
| ID | 3906422 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | + |
|---|
| Start bp | 1284931 |
|---|
| End bp | 1285824 |
|---|
| Gene Length | 894 bp |
|---|
| Protein Length | 297 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 637878413 |
|---|
| Product | hydrogenase accessory protein HypB |
|---|
| Protein accession | YP_480190 |
|---|
| Protein GI | 86739790 |
|---|
| COG category | [K] Transcription
[O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0378] Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase |
|---|
| TIGRFAM ID | [TIGR00073] hydrogenase accessory protein HypB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.0788642 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGGTCGCT TCCATCCCCA CCCGGAAGGG GCGCATCCCC ACCCGGAAGG GGCGCCGCAC
GAGTACTCGG GTCCGCACCC ACCGGCCGGG GTGTCCGTCG GGGACCATGC CGGCTATGGC
ACCGGGCCCG AACGGGTCGA GGTCCTCGAG CGGATCCTCG GGGAGAACGA GCGGGTCGCG
CTGGCGAACC GGGCCGCCTT CGACGCCGCC GGCGTCACGG TGGTGAACCT GATGTCCGCT
CCCGGCGCCG GTAAGACCAC CCTGCTGGTC GGGACGCTGC GCCGTCTCGG CCCGCAGCTG
CGGGTCGGGA TCATCGAGGG CGACATCGAG ACCAGCATCG ACGCCGACCG CCTCGACGGG
CTCGGCGCGG CGATCGCCCT GATCAACACC GGTAACGGGT TCGGCGGGGA GTGCCACCTG
GACGCGCCCA TGGTCGCCTC GGCGCTGGGC CAGCTGCCCC TGCGCGACCT CGATCTCGTC
GTTATCGAGA ACGTCGGCAA CCTGGTGTGC CCCGCCGAGT TCGAGGTCGG GGAGGACCTG
CGCGCGATGG TGTTTGCCGT CACCGAGGGC GAGGAGAAGC CCCTCAAGTA CCCGGTCATG
TTCCGCTCGG CCGACCTGGT GCTCGTCAAC AAGACGGACC TGCTTCCCCA CCTCGACTTC
GACCTTGACG CGTTCCGGAA GAACCTCGCC GACGTCAACC CGGACGTGGC TGTGCTGGAG
GTCAGCGCCC GTACCGGCCA GGGGGTCGAC GCCTGGTGCG CGTGGCTGCG CGCCCTACCC
GGACAGCGCC CGGAGCCTAC GATCGGCGGG GCCGCGCTCG ATGACGACGG GGATCCAGCG
CGGGCGGGCG CTCGACGGCG GGCGCCTGGA AGGCGACGGT CTCGACGTCC GTGA
|
|---|
| Protein sequence | MGRFHPHPEG AHPHPEGAPH EYSGPHPPAG VSVGDHAGYG TGPERVEVLE RILGENERVA
LANRAAFDAA GVTVVNLMSA PGAGKTTLLV GTLRRLGPQL RVGIIEGDIE TSIDADRLDG
LGAAIALINT GNGFGGECHL DAPMVASALG QLPLRDLDLV VIENVGNLVC PAEFEVGEDL
RAMVFAVTEG EEKPLKYPVM FRSADLVLVN KTDLLPHLDF DLDAFRKNLA DVNPDVAVLE
VSARTGQGVD AWCAWLRALP GQRPEPTIGG AALDDDGDPA RAGARRRAPG RRRSRRP
|
|---|
| |