| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_0992 |
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| Symbol | |
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| ID | 3905848 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Frankia sp. CcI3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007777 |
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| Strand | - |
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| Start bp | 1178211 |
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| End bp | 1180655 |
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| Gene Length | 2445 bp |
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| Protein Length | 814 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 637878325 |
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| Product | LuxR family transcriptional regulator |
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| Protein accession | YP_480104 |
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| Protein GI | 86739704 |
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| COG category | [K] Transcription
[R] General function prediction only
[T] Signal transduction mechanisms |
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| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain
[COG3903] Predicted ATPase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGTGTGTGT CCGGACGTGG AAGGTCGAAC CTGCCGGCGG AACTAACCAG CTTCGTCGGT
CGCAGACAGG AGCTGGCAGA GGCATTGCGG TTGCTGGCCG GCGCCCGGTT GCTCACGCTG
ACCGGGCCCG GGGGGGTCGG GAAGACCCGC CTCGCCCTTC GGCTCGCGGC GGACCGGCAG
CGCGCGTTCC CCGACGGTGT CTGGATCGCC GAGTTGGCCG ACCTCGACGA CCCGTCACTG
GTCGTCGACG CGGTCGCCGA GGCGATGGAC CTGCAGTTCC TCTCCGGGCG ATGGACCGCG
GCGACGCTCG CCGCGCACCT TGCTCCGCGC AGGATCCTGC TCGTGCTCGA CAACTGCGAG
CACCTCGTGG ACACGTGTGC CCGGCTCGTC AACACCCTGC TGCGCGCGGG CCCGGACCTG
CGGGTCATCG CAACCAGCCG CCACCTGCTC GGGGTGGCGG GGGAACGGGT GCTGAAGGTG
CCCCCGCTGA GAGTACCCCC GGTGCCGGCC CCGGGCGCGG ACCAGTCCGC GTTGGCTGGC
GGGCTCATCC AGTACGAGGC GGTGAGCCTG CTGGCGGAGC GCGCGGCGGC GGTACTGGGG
GAATTCAGCC TCGACGAGGG CAACTGGCGG ACCGTCGCGT CGCTGTGCCA TCGCCTGGAT
GGCATCCCGC TGGCGATCGA ACTGGCGGCT GCTCGGCTCC GGACGCTGTC CCTGGAGCAG
ATCCTCGATC GGCTCGACAA CCGCTACGCC CTGTTGACGC GAGGCAACAG GGCCGGACCC
CGCCGCCAGC AGACCCTGCG CGCGCTGATC GACTGGAGCT TCGGCCTGTG CAATCCCGAG
GAGCAGCAGA TGTGGGCGTG CCTGTCGGTG TTCGCCGACG GGTTCACCTT GGAGGCGGCT
GAGCAGGTGG AGGGCGCCAG GTACCCGCCG GCAGTCGTGC TGGACGTGCT GAGCGGGCTG
GTTGACAAGT CGATTCTGGT CCGTGACGAC GACGAGGGGA TGGTCCGGTT CCGGATGCTG
GACACCATTC ACCAGTACGG CCAGGACCGC CTGCGCGAGT CCGGTCGGGA ACAGGACGTG
CGCCGTCGGC ATCTCGCCTA CTACCGCCGG ATGGCGGCCC TCGCCGACGC TCAGTGGTGC
AGCCCGGCCC AACTGGACTG GATCCGGCGG ATCCGGAACG AGCAAGCGAA CCTACGGGTT
GCGCTGGACC TCTGCCTCAC CACACCGGGC CTGGCGGAGA CCGCTCTGTC CATCATGGTG
GCCTTGTGGC AATACTGGGC CGCCATCGGG CTACTCAGCG AGGCGCGCTT CTGGTTTGAT
CGGGGGCTGA GCAAGGCCAC GGAGCCGGAC GGGATCCGGG CCATCGGTCT GCAATCGGCC
GCCCACGCCG CGTCCCTCCA GGGCGACATC ACCGCGGCGG CGTCGCTGCT GGCCGAGGCT
CGCGATCTGG CCGCCAGGCT GCACGAGCAG CGGGTGCTCG CACGCATCGC CTGCGTCGAG
GGCAGGCTCG CCGCCATCAG CGGGGACACG TCGGCGGCGG TGGAGCGCAG TCAGGACGCC
CGCCGCCGGT TCACTGACCT CGACGAGCCG CTCGGTCTCG CCCAATCACT GCTCTATCTC
GGGCTGGCCC ACGGAATCCG CGAGGAACAG GACGCGGCGG CGACCGTCTT CGCGGAATGC
GTGGCGTTGA CCGAGCGCTT CGGCGAATGC TGCTTCCGCT CGTTCGCTCT GTGCGGCCTC
GGTCTGGCGG CCTGGCAGCT AGGCGAGTTG GAGCAGGCGA TGGAGCACCA TGCCGCGGCC
ATCTCCCTCA AATACGCGTT CCACGACCAT GTCGGCATCG CCGTCGCGCT GGAGCAGCAG
GCGTGGGTCA TGGCCTCGGC CGGTCGGCAC CACGAGTCCG CGGTCCTGCT CGGCGCGGCC
GGGCGGATCT GGCGTGAGAC CGGGGCGTCG ATCGCCGTCT TCGGGCTCGC CTCGTTCCAC
CACCGATGCG AGGCGTCCCT GCGACGCGTC CTGGATCAAC GGAAGCTCGA ACGCGCCCTA
GCGCAGGGCG CGGAACTCGA CCTGGACGAG GCCGTCGCCG CGGCTACCCA GGGCACCGGG
ACTCCCGTCG CCCACCCCGT CGTTCCCGCC GGCGAGCCGG AGGTGCCCCT GACCCCTCGG
GAGCGTCAGG TGGCGGACCT CGTCGCCCGC GGTCTGAGCA ACAAGGAGAT CGCGAGCTAC
CTGGTGATCG CCCAGCGCAC GGCGGAAGGT CACGTCGAGC GCATTCTCGG CAAGCTCGGT
TTCACCTCAC GGGCCCAGAT CGTCGCGTGG GTTAAGGACA GCAGCAGGAG CCCCCAGGAA
CGTACGTGTG AGCCGCAGCG ACATGTTGGC GAGCGCGAGC GGAGCGCCTC CACCTCACCC
CCGCCTCCTC ATGGAGAGTC TGGAGGCGTA CAACCTCACG GGTAG
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| Protein sequence | MCVSGRGRSN LPAELTSFVG RRQELAEALR LLAGARLLTL TGPGGVGKTR LALRLAADRQ
RAFPDGVWIA ELADLDDPSL VVDAVAEAMD LQFLSGRWTA ATLAAHLAPR RILLVLDNCE
HLVDTCARLV NTLLRAGPDL RVIATSRHLL GVAGERVLKV PPLRVPPVPA PGADQSALAG
GLIQYEAVSL LAERAAAVLG EFSLDEGNWR TVASLCHRLD GIPLAIELAA ARLRTLSLEQ
ILDRLDNRYA LLTRGNRAGP RRQQTLRALI DWSFGLCNPE EQQMWACLSV FADGFTLEAA
EQVEGARYPP AVVLDVLSGL VDKSILVRDD DEGMVRFRML DTIHQYGQDR LRESGREQDV
RRRHLAYYRR MAALADAQWC SPAQLDWIRR IRNEQANLRV ALDLCLTTPG LAETALSIMV
ALWQYWAAIG LLSEARFWFD RGLSKATEPD GIRAIGLQSA AHAASLQGDI TAAASLLAEA
RDLAARLHEQ RVLARIACVE GRLAAISGDT SAAVERSQDA RRRFTDLDEP LGLAQSLLYL
GLAHGIREEQ DAAATVFAEC VALTERFGEC CFRSFALCGL GLAAWQLGEL EQAMEHHAAA
ISLKYAFHDH VGIAVALEQQ AWVMASAGRH HESAVLLGAA GRIWRETGAS IAVFGLASFH
HRCEASLRRV LDQRKLERAL AQGAELDLDE AVAAATQGTG TPVAHPVVPA GEPEVPLTPR
ERQVADLVAR GLSNKEIASY LVIAQRTAEG HVERILGKLG FTSRAQIVAW VKDSSRSPQE
RTCEPQRHVG ERERSASTSP PPPHGESGGV QPHG
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