| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_0923 |
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| Symbol | |
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| ID | 3906087 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Frankia sp. CcI3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007777 |
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| Strand | + |
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| Start bp | 1065971 |
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| End bp | 1069678 |
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| Gene Length | 3708 bp |
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| Protein Length | 1235 aa |
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| Translation table | 11 |
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| GC content | 74% |
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| IMG OID | 637878257 |
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| Product | ATP-dependent transcription regulator LuxR |
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| Protein accession | YP_480036 |
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| Protein GI | 86739636 |
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| COG category | [K] Transcription |
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| COG ID | [COG2909] ATP-dependent transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.280541 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTCGACG AACAGTCACC GATGTCCGGT TCCGTCCGGT CCCGTCCCGC CGCATTTGAG
GGTCGACGGC CCCTCCGCCC GGAGGATGCC GCTCCCCGTC CCGGGGAGGA GGATCCCGCG
GACGGTCCCG AAAGCCTGCC GCTGCTCCTG AACCGGTTCG TCCCCCCGCC GGCCCCGCCG
GGTCATGTCG ATCGACCACG GCTGCTCGAC GCACTCGACG CCGCCACCGT CCTGCCCCTC
ACGGTGGTGC GGGCTCCGGC CGGCTCGGGC AAGACGGTGC TGGTCGCGGC CTGGGCCGCG
GCCCGGCGGG GGGAGACGCC GATCGTGTGG GTGCGGGTCG ATCCGGCGGT CGTCCCCGGC
CCGCGTGGCG GGGGGCCGGG CCTCCCACTG TGGCCGCAGC TGCTGCACGG GCTGGGACGA
CACGGTCTGC TCCCGGCCGG TGAGGGCTTT GGGAGCCGGT ACGGTCCCGC GGCCGACGAT
CTTTATGATC GGCGTTACCG ACGGCTCGCC AACATCCTCG CCGACCTCCC GACGTCCTTC
ATACTGATCC TCGACGACGT GCATCTGATC ACCCGGCGTT CGGACCTCGA CGGCCTCGAA
CTGCTGATCG ACGGGGCCGC GGATCGGGCC CGGATCATTC TGATGGGCCG GATGGTGCCC
GTGGCGCTGC ACCGGCTGCG GGCCGCCGGG TGGATCACCG AGATCGGTCC GGCAGATCTC
GCCTTCACCC GGGCGGAGGC CGCCGCGCTC CTGGGCCGGC AGGAGATCAC GGGCCGGCAG
GAGATCACGG CGTCGCCCGC GACGGTGAGC GGTCTCGTGC ACGTCACCGA GGGCTGGGCG
GCCGGGCTGC GGCTGGCGGC CGGGGCGCTC GCCGCACGGG AACGACGACC ACTGCCGGGG
GCGGATGGGC GGTGGGAAGC GGCCGTCGCA TCCCCGTCCG GTGGCCTCGG TGACACGGCT
GGTTTCTCCG GCGCCGTGGC CGGCCATCCC GCGATCGCCG ATTTCCTGCG GGCCGAGGTG
CTAGCCGGTA AGCCGTCGCC GGTACGCCGC TTCCTCCTGC GGACCAGTGT CCTGGAGCGC
ATGACCGGGC CGCTGGCGGA CGCCGTCGCG GCCGAGCGGA TGGACGCGGG CGTCCTGGCG
GCGGCTACCG GCTCGCGTGC CGCGCCGGCA CCCACGGTGG GCGCACGGGT GAGCGGGAAG
GAAGTTCTGG CGGCACTCGC GCATGCCGAC GGCTTCGTGG TCGAGCTCGA CCACGACGGC
GGATGGTTCC GCTTTCACCG GCTGCTTGCC GCGGTGCTGC GTTCCGCGTT GGCCGCGGAC
GGCGACGAGG ACACCGCTGA GCTCCACTTG CGAGCCGCGA TCTGGTTCGC CGCGCACCGT
CGGACGACGG ACGCGGTACA TCACGCCGCG CATGCCGGGG ATTGGTGGTA CGCGGCCTGC
CTGCTCGTCG ATGGGACCGA GATGGTGGAC GCCCTGCATG GCGGCGTCGC GGGGTTCAGC
CCGATCATGA CGGGGATGCC GGACTCCCCG GCCTCGTGGT CGCCGGAGTG CGCACTGGTC
GCCGCCGTGG GCCGGCTGGG CCGGGGACAG GTGGGGGCGG CCACCAGATA CCTGCAGGTG
GCCCGGGGGA GCATCGCCGC GGCGGTCGTG TCCCGTCGTC GCGCGCTCGC GGTCCGGGCT
GATCTCGTCG ACCTGCGCCG GGCGGAGCTC GCCGGGGCGT GCGAGGAGAT GCTGAGCATC
ACCCGCCGGT TGCTACGGTC CCCGGGCAGG CCGGGCGCCG TGCCGCAGCC GGTTGGTCCG
GTGGTTGCCG GTGTGACGGG GCGGGCGGAG GCTGCGGGGA AGGGCCGGCC ACGACCGCCC
GCCGACATGC GGCCGCCGGG AGATCCCCGG TTCCTGCCCG CCGGCCCCGT CGGGGGCGCC
GAAGGTCCCG GACGGGAGCC GGGCGGTGTT CGACGTGATC ACGTCGGGGG AGACGTGGCC
CGCCCCGGCT CCGTCGTCGG TGGGGCCCCG CCGGACCGCC CGGCCGGGAT CGTCGCGCGA
TCGACCGGTG GTGGCGTGGA TGGGGGCGTG GATGGTTCCG ACAGGATCGC GGCAGCCGTG
GCCTGGTGTG CGCGCGGGCG GGCGGAGCTC TGGCTCGGCC GTCCCGACCT GGCGCTGGAG
GCGTTGCGGG AGGCGATGAC GGCGGCCCGG GATACCGGTC TGCGGACGGT CGAGGCATCG
GCGTCCGGGG CGATGGCTCT CGCCTACGTG CTACGGGGTC GGTTGCGGCA GGCCGAGTCC
AGCGCGGCAG CGGCGGTCGC CACCGCCGCT GTGATCACTG CCAGCCCGGT CGATCCCACG
GCCGTCCCCG CATCCTCGGA TGGTCGGACC GACATGCCGG CAGGCCTGGT CGAGGCCCAT
CTCGCCCATG CGATGGTGGC GGCAGCCCGG GTCGACGACG TGCGTGTCAC GCACCATCTC
GACCTCGCGC GGATGGCCTT CACCCCGGCG CATCCTCCCT ACCTGCTCGA TCTGATCGTC
GTGCTGGAGG CGAGGGCGCG ATGCCGGCGT GGGGAGGCGG ACGATGTGCG GGCTGCCCGC
CGTCTCCTGG CGTCGCGAGG ACGGCCGGCC GGACCGCCGC TGTGTCTGTC GCTGTGGCGC
GCCGCCGAGA CCGACCTGCT GATCGCCGTC GGGAACGCCC AGGCTGCCCG GCAGCTGCTG
GGCCAGCTGG CCGACACCCG CCGGCCGGAC CATGCTCTCG CGCTCGCGGC GGCCCGGGCG
AACCTCGCGT GCGCTGATCT AGAGGGAGCG GAGCACGCGG TGGCGGCTCT GCTGCGGGCG
GACGGTGGCG GAGGCGGTTC GGTGGTGTCG GCATGTGTGG TGGCAGCGGT GGCGGCCGCG
CGGCGTGATG ACCATGCGCG GGCCACCGAC CTGCTGGCGC GTGCCCTCGC GCTCGCCGAG
GACGAGGGAC TCGCTGGCCC GTTCCTCGAA TTCGGCGGCG AACCGTTGGC GATCTTGGAT
GCCCATCCCG GCCTCTCCGC CGCACATCCG TTCTTCGTGT CGACTTTGCG GGCCATGGCC
ACGACGGAGT CCGCCGCCGC GGTGAACCCG CGGACGCCGA CCGACGGCGG ACCGGTCATG
GCCGTATCCG GGGCGGGGGT GCCGCCTCTG GGGGTGCCGC CTCTGGGGGC GGCCGGCCTG
GAGGTGCCGA ACGGGGGGAC GCCGAGCGGG GGGATGCCGA GCGGAGAGGT GGCGGTGCCC
GCGCCCGCGT GGCCGGCCAC CCCACGTCGA TCCGTCATGA GCGGGCGAAT GGCACGTCCG
GCCCTCATGA CCCCCGCGGC GCGCTCGGCG CCGCCTGACC GTGACAGGCA GGGGGCCGAC
GTCCCGCGCG GCCCCTCCGG CCCCTCCGGC CCCTCCGGCC CCTCCGGTCC GGCGGGCTAC
GGCCTTGGGA CGGGAACAAG TCCGATCTCC CTAGGGCAGC CGGGGGCGCG TGAGCGCTCA
CCCGGTTCCA GGGACGGGCG GGGACCCGGT GCGGGTGGCC GGCTCAGCGA CCGGGAACTC
GCGGTCCTCA GCTATCTGCC GACGATGTTG ACGACCACCG AGATCGCCGC CGAGCTCTTC
GTCTCCGTGA ACACGGTGAA GACGCACCTG AAGAGCATCT ACCGCAAGCT CGACGTGCCA
CGGCGTCGCG ACGCTGTACA TCGCGCGCGC GAATTGCGTC TATTGTAA
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| Protein sequence | MLDEQSPMSG SVRSRPAAFE GRRPLRPEDA APRPGEEDPA DGPESLPLLL NRFVPPPAPP
GHVDRPRLLD ALDAATVLPL TVVRAPAGSG KTVLVAAWAA ARRGETPIVW VRVDPAVVPG
PRGGGPGLPL WPQLLHGLGR HGLLPAGEGF GSRYGPAADD LYDRRYRRLA NILADLPTSF
ILILDDVHLI TRRSDLDGLE LLIDGAADRA RIILMGRMVP VALHRLRAAG WITEIGPADL
AFTRAEAAAL LGRQEITGRQ EITASPATVS GLVHVTEGWA AGLRLAAGAL AARERRPLPG
ADGRWEAAVA SPSGGLGDTA GFSGAVAGHP AIADFLRAEV LAGKPSPVRR FLLRTSVLER
MTGPLADAVA AERMDAGVLA AATGSRAAPA PTVGARVSGK EVLAALAHAD GFVVELDHDG
GWFRFHRLLA AVLRSALAAD GDEDTAELHL RAAIWFAAHR RTTDAVHHAA HAGDWWYAAC
LLVDGTEMVD ALHGGVAGFS PIMTGMPDSP ASWSPECALV AAVGRLGRGQ VGAATRYLQV
ARGSIAAAVV SRRRALAVRA DLVDLRRAEL AGACEEMLSI TRRLLRSPGR PGAVPQPVGP
VVAGVTGRAE AAGKGRPRPP ADMRPPGDPR FLPAGPVGGA EGPGREPGGV RRDHVGGDVA
RPGSVVGGAP PDRPAGIVAR STGGGVDGGV DGSDRIAAAV AWCARGRAEL WLGRPDLALE
ALREAMTAAR DTGLRTVEAS ASGAMALAYV LRGRLRQAES SAAAAVATAA VITASPVDPT
AVPASSDGRT DMPAGLVEAH LAHAMVAAAR VDDVRVTHHL DLARMAFTPA HPPYLLDLIV
VLEARARCRR GEADDVRAAR RLLASRGRPA GPPLCLSLWR AAETDLLIAV GNAQAARQLL
GQLADTRRPD HALALAAARA NLACADLEGA EHAVAALLRA DGGGGGSVVS ACVVAAVAAA
RRDDHARATD LLARALALAE DEGLAGPFLE FGGEPLAILD AHPGLSAAHP FFVSTLRAMA
TTESAAAVNP RTPTDGGPVM AVSGAGVPPL GVPPLGAAGL EVPNGGTPSG GMPSGEVAVP
APAWPATPRR SVMSGRMARP ALMTPAARSA PPDRDRQGAD VPRGPSGPSG PSGPSGPAGY
GLGTGTSPIS LGQPGARERS PGSRDGRGPG AGGRLSDREL AVLSYLPTML TTTEIAAELF
VSVNTVKTHL KSIYRKLDVP RRRDAVHRAR ELRLL
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