| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_0855 |
|---|
| Symbol | |
|---|
| ID | 3904337 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | - |
|---|
| Start bp | 995759 |
|---|
| End bp | 998077 |
|---|
| Gene Length | 2319 bp |
|---|
| Protein Length | 772 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 637878188 |
|---|
| Product | inner-membrane translocator |
|---|
| Protein accession | YP_479968 |
|---|
| Protein GI | 86739568 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0559] Branched-chain amino acid ABC-type transport system, permease components
[COG4177] ABC-type branched-chain amino acid transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.852549 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACCAGCA TCGACCTGGG ACTGGCGGGG ATCTCCCTCG GGGCGATCGC CGCCCTGTCC
GGTATCGGCC TGCTGGTCAC CTACCGCACC AACGGGGTCC TCAACCTGGC CCAGGGCGGC
ATCGCCACGC TGGTGGCGTA CGTCTTCCGC GAGATGGTGG TCGTGTGGGG GCTGCCGATC
TGGCTGGCCG CCATCATCGC GCTCGCCGTG GTGTCCCCCG GGATCGGCCT GCTGCTGGAG
CGGTTGGTCT TCCGGCCGCT GGCCCGTCGC CGCGCATCGG CGGCCGAATC CCTGGTCGCC
AGCCTCGGTG TGCTGGTCCT CACCCTCGGG ATGACGGCGG GCATCTGGGG TCTGGGCTCG
CGTAGTGACG CACCAAGCAT CTTCCCGAAC TCGTCGGTGA AGCTGTTCGG TGACACCCGG
ATCGGTGTCG ACGCGCTGGC CGAGCTCGCG ATGGTCGTGG TGTTCTGCGC GGTCATCGGC
GTCATCGCCA CCCGCACGGT GTTTGGCCGC CAGATCCGCG CGGTCGTCGA CGACCGGCAG
CTCGCCGAGC TGTCCGGTGT TCCCGCGGAC CAGGTCGCCG CGGCTGGCTG GGCGGCGGGG
ACGACGCTCG CCGGCCTCAC CGGCATCCTG CTCGCCCCCC GCTTTCAACT CACCCCGTAC
GGGCTGACCC TGCTGGTGCT GGAGACCTTT GCGGTGGTGG TGGCGGCCCG GCTGTCGAGC
ATGCCGGTGG CCGTCCTCAC GGCCCTGGGC ATCGCCGTCC TGCAGAGCGA ACTCAAGCAG
TTCACCCTCG ACGGTAACGC GGGCCAGATC CTCACCGTCC TGCAGTCGAA CCTGTTCATC
GTCGCCCTGC TGGTCCTGCT GCTCGCGGTG CCGAAGCTGC GCGAGCTCGG CACCGGCGAC
TCCGGGACCA CCGCCAGCTT CTCCAGCCGC GGCGCACCGC CGTCGGGCCC GGCCAGCCAG
ACCAAGGCCC GCCGCGACTT CCTGGGCAAG CTCGGCGGTG CCGCGCTGCT GCTCGCACCG
CTCACCTTCG CCCCGTCCGA TCTGCGTTCG GCGTTCATGG TCCCGGCGCT CGCCCTCATC
TTCCTGTCGG TGGTCATCGT CACCGGCTAC AGCGGCCAGC TCTCCCTGGG CTCGGCCGGC
TACGCGGGCC TCGGGGCGCT GCTGTCACTC AAGCTCGCCA ACGGTGACCT GTTCGGACTG
CCGAAGCTGC CGGGCGTCGC GTCGATGTTC ATCGGCGCCC TGCTCGTCGC CCCGATCGGT
CTGATCACCG GCTACCCAGC GATCCGCCGC CGCGGCCTCA CCCTGGCGCT GACCACCTTC
GCGGTCGGCG CCGTGGTCAG CCGTTTCGTC TTCGAACAGC CCACCTTCGC GACCGGCCTC
TACCTCGACC CGCTGACGTT CTTCGGCTGG GAGCTGCCCG ACGAGGCGTT CTACGTCCTT
GAACTGGTCT GCCTGGGCCT CGGCCTGTTC TTCGTGGGTA ATCTGCATCG CGGTCGGCTC
GGTCGGGCGC TGCTCGCCGT GCGTGACCAT GCGGAGGGTG CGGCGGCGGT CGGGGTTGAC
GTCCGCAACC TCAAGCTGCT GGCCTTCACC GTCTCCTCCG TCGTCGCCGG GCTGGGTGGT
GCGCTGCTGG TGCACAGCAG CTACTCGTTC TCCGCCGACG ACTTCGCACC GTTGCAGAGC
CTGCTGTGGT TCACCGCCGT GGTCGTCTTC GGCGCCGACA GCGCGGCCGG CGCGATCGTC
GCCGCGGCGT TCATCGTCAC GATCGACGTA CTGGCGCCGG CCGGATCCTC GATCCTCGCC
ATCGGCATCC TCGCCCTCGC CCTCGGCTGG ATGCCCGGCG GCCTGGCCTC GGCCGTCCGG
GGTCTGCTGC GGCTGCTCGC CCTCCACCTC GCGGACGGCT TCGTCGATCC CAACCATCGG
GCACCGCGTC CGGTGCCGGT GCGCATCTCC GCCGTCGGAT ACCTGCCAGC GACCACTGGC
ATCACCGGCG TCACCGGGAT CTCCGGGATC GGCGGGATCG GCGCGCCTCT GGGGGCCGCC
CAGCCCGGGC CATCCGCGAG CTGGCCTCCG GGCCGCTCCT CGCCCGTGCT GCCACCGGGC
TCGCCGCGGC CGACCCCGTT CGGGGCCAGC CTGCTGACCC TGGTGCAGGA GTATGCGGCC
CGGTCGAGCG GCGCACCGCT GCTGCCCCCC GCGCCCCGCG GCGAGCGCGG TGGCCTGCCC
GCCGACGTCT ACCCCACCTC ACCAGGTCAC GTGGGCCACG AGCAGGGGGG TTCGGGACCC
GCGGCGGCGA CCTCCCTGCG GGACGGAGGT CGGGTATGA
|
|---|
| Protein sequence | MTSIDLGLAG ISLGAIAALS GIGLLVTYRT NGVLNLAQGG IATLVAYVFR EMVVVWGLPI
WLAAIIALAV VSPGIGLLLE RLVFRPLARR RASAAESLVA SLGVLVLTLG MTAGIWGLGS
RSDAPSIFPN SSVKLFGDTR IGVDALAELA MVVVFCAVIG VIATRTVFGR QIRAVVDDRQ
LAELSGVPAD QVAAAGWAAG TTLAGLTGIL LAPRFQLTPY GLTLLVLETF AVVVAARLSS
MPVAVLTALG IAVLQSELKQ FTLDGNAGQI LTVLQSNLFI VALLVLLLAV PKLRELGTGD
SGTTASFSSR GAPPSGPASQ TKARRDFLGK LGGAALLLAP LTFAPSDLRS AFMVPALALI
FLSVVIVTGY SGQLSLGSAG YAGLGALLSL KLANGDLFGL PKLPGVASMF IGALLVAPIG
LITGYPAIRR RGLTLALTTF AVGAVVSRFV FEQPTFATGL YLDPLTFFGW ELPDEAFYVL
ELVCLGLGLF FVGNLHRGRL GRALLAVRDH AEGAAAVGVD VRNLKLLAFT VSSVVAGLGG
ALLVHSSYSF SADDFAPLQS LLWFTAVVVF GADSAAGAIV AAAFIVTIDV LAPAGSSILA
IGILALALGW MPGGLASAVR GLLRLLALHL ADGFVDPNHR APRPVPVRIS AVGYLPATTG
ITGVTGISGI GGIGAPLGAA QPGPSASWPP GRSSPVLPPG SPRPTPFGAS LLTLVQEYAA
RSSGAPLLPP APRGERGGLP ADVYPTSPGH VGHEQGGSGP AAATSLRDGG RV
|
|---|
| |