| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_0819 |
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| Symbol | |
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| ID | 3906446 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Frankia sp. CcI3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007777 |
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| Strand | + |
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| Start bp | 954966 |
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| End bp | 956039 |
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| Gene Length | 1074 bp |
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| Protein Length | 357 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 637878152 |
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| Product | squalene/phytoene synthase |
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| Protein accession | YP_479932 |
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| Protein GI | 86739532 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1562] Phytoene/squalene synthetase |
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| TIGRFAM ID | [TIGR03464] squalene synthase HpnC |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.224139 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACAGCCA TCGACGCCCG AACCAGCCCA TCACGCACGC CTGCCCAGCC GGCCGCGACG
GGCCTGGCAA CTCCCGCCGA GCAGCTGCTG CGCGCCGCCC CGGCGGAGAA CTTCCCGGTC
TCGCCGTTCG TTCTGCCCGC GGCGGTTCGT TTCCACTTCA ACGCGTTGTA CGCCTTCAGC
CGGCTCGTCG ACAACCTCGG CGACGAGGCG GCCGGCGACC GGCTCGCCCT GCTCGACCGG
TTGTCGGCGG ACCTCGAGGT GATCTGGACA GGTGGGCAGC CGGAGCTGCC GGTCCTGCGC
CTGCTCGCGC GGACCGTGCG GGACTGTGAC CTGCCCGCCG AACCGTTCCA GCGCCTCGTC
GAGGCCAACC GGCAGGACCA GCGGGTCACC CGTTACGAGA CCTTCGACGA CCTGGTCCGC
TACTGCACGC TCTCGGCCGA TCCGATCGGA CGGATGGTGC TGGGCGTCTT CGGGCTGGCG
ACCCCCGACC GGGTCGTGCT GTCGGACCGG GTGTGCACCG CCTTGCAGCT CGCCGAGCAC
TGGCAGGACG TGGCCGAGGA CCTCGCCGCC GGCCGGATCT ACCTGCCGCT GGAGGATCTG
GACACCTTCG GGGTGACCGA GGCCGATCTG CGGGCTTCCG TCGCGAGTCC GGCCGTGCGC
CATCTGATGG CCTTCGAGGT CGCTCGGGCC CGTACGGTGA TCGACCAGGG CGCTCCCCTG
GTGTCGATGG TGCCCGGGCG GCTGCGGCTG GCCCTGGCCG GTTTCGTGGG CGGGGGCCGG
GCGGCGTTGG ACGCGATCCG GCGCGCCGAC TACGACGTGC TCGGTGGGCC ACCGAAGGCG
ACGAAGCCAC GGGTCGCCGA GTTCGCGCTG GCGGCGCTGG CCCGGTCGCT GGCTCCCGGA
GCGTCGGCGG TGGCGCACAC GGCGGCCGCC GTCGCCACCG CGACCAGCGC GGCCGGGGCC
TGGCCGGGTT CCGGTTCCGG TTCCACAGCC CACGGCGGCA CCGCCGCGAC GAGTACCCAG
GCCGGCGTCC CCGCAGCACA GTCCGTTCTT CCGGAGATGG GTGAGGTTCG ATGA
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| Protein sequence | MTAIDARTSP SRTPAQPAAT GLATPAEQLL RAAPAENFPV SPFVLPAAVR FHFNALYAFS
RLVDNLGDEA AGDRLALLDR LSADLEVIWT GGQPELPVLR LLARTVRDCD LPAEPFQRLV
EANRQDQRVT RYETFDDLVR YCTLSADPIG RMVLGVFGLA TPDRVVLSDR VCTALQLAEH
WQDVAEDLAA GRIYLPLEDL DTFGVTEADL RASVASPAVR HLMAFEVARA RTVIDQGAPL
VSMVPGRLRL ALAGFVGGGR AALDAIRRAD YDVLGGPPKA TKPRVAEFAL AALARSLAPG
ASAVAHTAAA VATATSAAGA WPGSGSGSTA HGGTAATSTQ AGVPAAQSVL PEMGEVR
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