| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_0580 |
|---|
| Symbol | |
|---|
| ID | 3905750 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | + |
|---|
| Start bp | 675819 |
|---|
| End bp | 677012 |
|---|
| Gene Length | 1194 bp |
|---|
| Protein Length | 397 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637877913 |
|---|
| Product | elongation factor Tu |
|---|
| Protein accession | YP_479693 |
|---|
| Protein GI | 86739293 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0050] GTPases - translation elongation factors |
|---|
| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00485] translation elongation factor TU |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.700966 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGCGAAGC AGAAGTTCGA GCGGACGAAG CCGCACGTCA ATATCGGCAC CATTGGTCAC
ATCGACCACG GCAAGACGAC CCTGACCGCG GCGATCACCA AGGTCCTGCA CGACGCCTAC
CCAGACCTCA ACCCCTTCAC GCCGTTCGAC CAGATCGACA AGGCGCCGGA GGAGAAGGCC
CGCGGCATCA CGATCTCGAT CGCCCACGTC GAGTACCAGA CCGACACCCG GCACTATGCG
CACGTCGACT GCCCGGGACA CGCTGACTAC ATCAAGAACA TGATCACCGG TGCCGCTCAG
ATGGACGGCG CGATCCTGGT CGTGTCCGCC ACCGACGGCC CGATGCCGCA GACGAAGGAG
CACGTGCTCC TCGCCCGCCA GGTCGGCGTG CCCTACATTG TCGTCGCCCT GAACAAGGCC
GACATGGTCG ACGACGAGGA GATCCTCGAG CTCGTCGAGC TGGAGGTCCG GGAGCTGCTG
AGCTCGTACG AGTTCCCGGG CGACGACGTT CCGGTCGTCC GGGTCTCCGC GCTCAAGGCG
CTGGAGGGCG ACAAGGAGTG GGGCGCCAAG CTCCTCGAGC TCATGGCGGC GGTCGACGAG
TCGATCCCCG AGCCGCAGCG TGACATCGAC CGGCCGTTCC TCATGCCGAT CGAGGACGTC
TTCACGATCA CCGGTCGTGG CACCGTGGTC ACCGGTCGCG TCGAGCGCGG AATCGTCAAG
GTCAACGAGA CCGTGGAGAT CGTCGGTATC AAGCCGGAGA CCACCTCCAC CACCGTGACC
GGTGTCGAGA TGTTCCGCAA GCTGCTCGAC GAGGGGCGTG CCGGCGACAA CGTCGGTCTG
CTCCTGCGCG GTATCAAGCG GGAGGACGTC GAGCGCGGCC AGGTCATCGT CAAGCCGAAG
TCGATCACCC CGCACACGGT GTTCGAGGCT CGCGTCTACA TCCTCAACAA GGATGAGGGC
GGACGGCACA CGCCGTTCTT CAAGAACTAC CGCCCGCAGT TTTACTTCCG CACCACCGAC
GTGACCGGCG TCGTGACCCT CCCCGAGGGC ACGGAGATGG TCATGCCGGG GGACAACACC
GAGATGACGG TCGAGCTGAT CCAGCCGATC GCCATGGAGG AGGGTCTGCG CTTCGCCATC
CGCGAGGGTG GCCGGACCGT CGGCGCGGGC CAGGTTACGA AGGTTCTCAA GTAG
|
|---|
| Protein sequence | MAKQKFERTK PHVNIGTIGH IDHGKTTLTA AITKVLHDAY PDLNPFTPFD QIDKAPEEKA
RGITISIAHV EYQTDTRHYA HVDCPGHADY IKNMITGAAQ MDGAILVVSA TDGPMPQTKE
HVLLARQVGV PYIVVALNKA DMVDDEEILE LVELEVRELL SSYEFPGDDV PVVRVSALKA
LEGDKEWGAK LLELMAAVDE SIPEPQRDID RPFLMPIEDV FTITGRGTVV TGRVERGIVK
VNETVEIVGI KPETTSTTVT GVEMFRKLLD EGRAGDNVGL LLRGIKREDV ERGQVIVKPK
SITPHTVFEA RVYILNKDEG GRHTPFFKNY RPQFYFRTTD VTGVVTLPEG TEMVMPGDNT
EMTVELIQPI AMEEGLRFAI REGGRTVGAG QVTKVLK
|
|---|
| |