| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_0552 |
|---|
| Symbol | |
|---|
| ID | 3904203 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | + |
|---|
| Start bp | 641597 |
|---|
| End bp | 642613 |
|---|
| Gene Length | 1017 bp |
|---|
| Protein Length | 338 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 637877881 |
|---|
| Product | polyprenyl synthetase |
|---|
| Protein accession | YP_479665 |
|---|
| Protein GI | 86739265 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0142] Geranylgeranyl pyrophosphate synthase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.0863635 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGCTA TCGGGCTGGA CGTCGTGGGG ATCAGGACCG ATCCTGATCT GGAAAAGGCC
GTGCGGGTGG GTCTCGCCCG GGTGGAGGAT CTGCTGCGCG AGTCGGTGCG CAGCGAATCC
GCCTTCGTGA CCGAGACCTC CCGCCATCTT GTCGACGCGG GGGGGAAACG TTTCCGTCCG
ATCGTCGTGC TGCTGGCGGC GCAGTTCGCC GATCCCGAGG CCGTCGGCGT GGTGCCGGCG
GCGGTGGCGA TCGAACTCAC CCATCTGTCG ACGCTCTACC ACGACGACGT GATGGACGAG
GCGCCGCGGC GGCGGGGAGC GGCCTCCGCG AACACGCGGT GGACGAACAC GGTCGCCATC
CTCACCGGGG ACTACCTGTT CGCCCGCGCT TCCGACATCA CGGCGGACCT CGGCCCGGAG
GCGACCCGCA TCCTCGCCCG GACGATCGCG ACCCTGTGCG AGGGGCAGAT CCGGGAGACC
GTGGGCCCGG CGCCCGGGCA GGACCCGGTC GAGCACTATC TGCGGGTCAT CACGGACAAG
ACCGCCTCGC TGATCGCGAC CTCGGGTCGG CTCGGTGCCA TGCTGGCGGG CGCGGACCCG
ATCACCGTCG ATACCCTCGC GACCTTCGGG GAGCTTTTCG GGGTGGCTTT CCAGCTGTCC
GACGACATCA TCGACGTTGC CTCGGACCCG GTGGACTCCG GCAAGACGCC CGGCACGGAT
CTGCGGGAGG GAATCCCGAC CCTGCCGGTG CTCTACGCGC TGCAGGCCGA CGACCGGGCG
GCGGGACGGC TCCGGGAGCT CATCACCACC GGATTCGCCC CCGGCGACGG GAACACGGAG
GACCGGGTGG GCGAGGCTCT CGATCTGCTA CGCGGCCACG TGGGCATGGC CCGGGCCCGG
GCGGAACTTA TCTCCTGGTC GAGCCGGGCG CGGGAATGCC TCGCGTCGTT GCCGGACAAC
CCGGCGAAGA CCGCCTTGGA GTCCCTCGCG GACTTCGTGG TTGACCGCAC CGGCTGA
|
|---|
| Protein sequence | MSAIGLDVVG IRTDPDLEKA VRVGLARVED LLRESVRSES AFVTETSRHL VDAGGKRFRP
IVVLLAAQFA DPEAVGVVPA AVAIELTHLS TLYHDDVMDE APRRRGAASA NTRWTNTVAI
LTGDYLFARA SDITADLGPE ATRILARTIA TLCEGQIRET VGPAPGQDPV EHYLRVITDK
TASLIATSGR LGAMLAGADP ITVDTLATFG ELFGVAFQLS DDIIDVASDP VDSGKTPGTD
LREGIPTLPV LYALQADDRA AGRLRELITT GFAPGDGNTE DRVGEALDLL RGHVGMARAR
AELISWSSRA RECLASLPDN PAKTALESLA DFVVDRTG
|
|---|
| |