| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_0528 |
|---|
| Symbol | |
|---|
| ID | 3905439 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | + |
|---|
| Start bp | 613123 |
|---|
| End bp | 614649 |
|---|
| Gene Length | 1527 bp |
|---|
| Protein Length | 508 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 76% |
|---|
| IMG OID | 637877857 |
|---|
| Product | uroporphyrinogen-III C-methyltransferase |
|---|
| Protein accession | YP_479641 |
|---|
| Protein GI | 86739241 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0007] Uroporphyrinogen-III methylase
[COG1587] Uroporphyrinogen-III synthase |
|---|
| TIGRFAM ID | [TIGR01469] uroporphyrin-III C-methyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.216012 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACGGACG GGCGAAGTGT GGGTGAGGTC TGGCTGGTCG GCGCGGGTCC GGGCGATCCC
GGTCTGCTCA CCGTTCGCGG CCGTGAGGTG CTGGCGAACG CGGACGTCGT GGTCACCGAC
CGGCTCGCCG CGGCCGTCCT CCTCGGCGCC GCCCCGGCCG GCGCCGAGAT CATCCACGTG
GGCAAGAGCC CGGCCGCCCC GTCGTGGACC CAGGAGGAGA TCAACGCGGT CCTCGTCGAC
CGGGCGCGCG CCGGTGCGCG CGTCGTCCGC CTCAAGGGCG GCGATCCCTA CATGCTCGGG
CGAGGCAGCG AGGAGGCGCA GGCCTGCGCC GCGGCGGGGG TCGCGTGCAC CGTCGTGCCC
GGCGTCACCT CGGCGCTGGC CGTACCCGCC TGTGCCGGCA TCCCGGTCAC CCATCGTGGT
CTCGCGCAGG AAGTTGCCAT CGTCTCGGGG CACCTGCCAC CCGGCCATCC GGAGTCGACG
GTGGACTGGG CCGCTCTCGC GGCCTCCCGG GCGACCATCG TCATCCTGAT GGGGGTGGCG
CGTCTCATGG ACATCGCCGA CGCGCTGCTC ACCGGCGGTC GCCCCGAGGC GACGCCGGTC
GCGGTCATCG AGCGCGGGGC GACCCCGGCG CAGCGGGTCC TGCGGACCAC CCTGGACGCG
CTGGCGATCG ACGCGATCGC GGCCGGTGTG CGGTCTCCCG CGGTGATCGT GGTCGGAGAG
GTCGCGGCGC GCCGGGACGC GCTGGCCTTG GAGGCGGGGC CGCTCACCGG GATCCGGGTA
CTCGTGGCCC GTACCCGGCC GCGGCCGGGT CTGCTGGCTC GCCGGCTGCG GCAGCTGGGC
GCGGATGCGG TCGAGACCGT CGTTGCCCGG CCCGCGCCGG TCGAGGACGC CGGTGCCGCG
CTGGTGGCGG CGCTGCCGGG AGCGGGCGGC CTGCTGCTGG CCGATGCGGA CGAGGTCGCC
GCCGTGGTGA CCCTGCTGCG TCGAGCCGGC ACCGACGTGC GGGCGTTGGC CGGCCTGACT
CTCGTCGCGG CCCGCGAGGA CGCCGCGGAA GCGCTTGACG GCCTGGGCCT CGCCTCGGTG
CCCGTCGCCG AGCTGTCCAC GGATCCGCTG TCCGCGGATC CATCGTCGAC CGGTCCCGCC
GGTCCCGCCG GTCCGACCGG CTCGTCGCGG GTGCTGATCG CCGGCGCGGC GGACCCGCCG
GACGCGGTGT GTTCCCTGCG CCGGGTGCCG CTGCTCACCG ACGTGACCGC CGAGCCGGAT
CCCCGGATCG CCGAGGAGCT CCGGCATGGC GACTTCGACG TCGCGGTCTT CGCGTCGTCC
ACCGCCGCCC GCGGCACCGC CGAGATCTAC GGACCTCTCC CGCCCGATCT GCTCATCGCG
GCGATGGGTC GACGCAGCGC GCTGGCCTGC GCGGCGGCGG GCATGCGGGT GGACATCGTG
CCCACCGAAC CCGGGGTCCA TCCGCTCGCG GCCGCCGTCG CGGACTTCGT CGTCACCAGC
CGGTCCACCG GCTCGCCTGG GGGTTGA
|
|---|
| Protein sequence | MTDGRSVGEV WLVGAGPGDP GLLTVRGREV LANADVVVTD RLAAAVLLGA APAGAEIIHV
GKSPAAPSWT QEEINAVLVD RARAGARVVR LKGGDPYMLG RGSEEAQACA AAGVACTVVP
GVTSALAVPA CAGIPVTHRG LAQEVAIVSG HLPPGHPEST VDWAALAASR ATIVILMGVA
RLMDIADALL TGGRPEATPV AVIERGATPA QRVLRTTLDA LAIDAIAAGV RSPAVIVVGE
VAARRDALAL EAGPLTGIRV LVARTRPRPG LLARRLRQLG ADAVETVVAR PAPVEDAGAA
LVAALPGAGG LLLADADEVA AVVTLLRRAG TDVRALAGLT LVAAREDAAE ALDGLGLASV
PVAELSTDPL SADPSSTGPA GPAGPTGSSR VLIAGAADPP DAVCSLRRVP LLTDVTAEPD
PRIAEELRHG DFDVAVFASS TAARGTAEIY GPLPPDLLIA AMGRRSALAC AAAGMRVDIV
PTEPGVHPLA AAVADFVVTS RSTGSPGG
|
|---|
| |