| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_0496 |
|---|
| Symbol | |
|---|
| ID | 3903016 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | + |
|---|
| Start bp | 580535 |
|---|
| End bp | 582106 |
|---|
| Gene Length | 1572 bp |
|---|
| Protein Length | 523 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 637877826 |
|---|
| Product | integrase |
|---|
| Protein accession | YP_479610 |
|---|
| Protein GI | 86739210 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.772953 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGATACGG CGCGGGGCGT GCTCGCCGAG TTCAGCCACG CGAGCACGCC GACTCAGGAC
TTGGTTCTCG CGGCGATCGA GGCTCGGCTT GAGCAGGAGC ACGGCCCGGG GGTGGTGCGC
CTGCCGGGTC GGACCCGGGC GCGGGCCCTG CTGCGGGAGC TGAGCCGCGG CACCAGCGCG
TTCGGTGGAG CCAAGGGCCG GCGGGAGATC GCGGGCCGCC CGGTGGCGCC TTACGGGAAG
CTGCGGGCGC ACCGGCCGGG TGAGTACCTG CTGGTGGACA CGACCAGGTT GGACGTGTTC
GCGATGGAGC GGGTGACGCT GCGCTGGGTG CAGGCGGAGC TGACGGTCGC GATGGACCGC
TACGACCGGT GCATCACCGG GCTGCGGCTG ACCCCGGTGT CGACGAAGGC GGTCGACGCC
GCGGCGGTGC TGTTCGAGTC GATCCGTCCG TTGCCGGAGC CGGCGGCGGG CTGGGTGGAT
GTCCGCCCGC CCTATCACGG TGTTCCTGGG CGGGTGGTGG TCGATGTCGA GCGGCTCGTC
GACGCCGGCG GCGTCCCGCT GTTGCCGTCG GTGGCGGCGG AGACCCTGGT GGTCGATCAT
GGCCGGATCT ATCTGTCGGA GCATCTGCTG TCGGTCTGCC AGCGGCTGGG GATCTCGGTG
CAGCCGGCGC GGGTCGCCCA GGCCACCGAC AAGGCAGCGG TCGAACGCTT TTTCCGCACG
CTGCGCGAGC AGCTACTCGT CGCGCTTCCC GGCTACAAGG GCCCGGACGT CCACCACCGG
GGCGCCGATG TCGAGGAGCA GGCGTTCTAC TTCCTCGACG AGCTCGAAGA ACTCATCCGC
CAGTGGGTCG CGGACTGCTA CCACCGTCAG CCCCATGGCG GCCTCGTGGT CCCGGAGGTG
CCGGGGCTGG CGGTGTCGCC GTTGGAGATG TTCGCCCACG GGGTGGCGCG GGCCGGTCAT
CTCCAGGTGC CCGCGCGGGC GGACCTGGTC TTCGACTTCC TGGCGGTCGA ATGGCGCACG
ATCCAGCACT ACGGGGTGGA GATCGGCGGG CTGCGCTACG ACGGGCCCGC CCTGTCGCCC
TACCGCAACC GGACCAGCCC GCACACTGGC GTCCACGCGG GCAAGTGGCC GATCCGCGTC
GACGCCGATG ACGTCAGCCG GGTCTACTTC CAGGACCCGG CCGACCAACG CTGGCATGTG
CTGCGCTGGG AGCACGCCGA CGCCCTGGGC GGCCCGTTCA GCGCGGACGC GCTGGCCTAC
GCCCGCCAGC TCGCCACCGC GACCGACCGG TTCCCCGACA CCCGCCGAGC ACTGGCCCGG
CTGTTGGAAC GCTGGGACGC GGGCCTGGCC GGCAACCGGG CCGAGCGGCG CATGGCGGTG
CGTCTGTCCG AACGGCGGCT GCGTCTCGTC GGCGACACGG CCGTCCCGGA CGAACCCGCC
CCGGCGGTCG CCTCGCCCGA CCAGGACCGT TCGGCCGAGG AGACGGCGGG CGATGACGAC
CGCGACGACG AGCTTGGCGC CCCGTTCCCT GGCGAAGACG ACTTCTACGC CGACGCGATG
GAGATCGTGT GA
|
|---|
| Protein sequence | MDTARGVLAE FSHASTPTQD LVLAAIEARL EQEHGPGVVR LPGRTRARAL LRELSRGTSA
FGGAKGRREI AGRPVAPYGK LRAHRPGEYL LVDTTRLDVF AMERVTLRWV QAELTVAMDR
YDRCITGLRL TPVSTKAVDA AAVLFESIRP LPEPAAGWVD VRPPYHGVPG RVVVDVERLV
DAGGVPLLPS VAAETLVVDH GRIYLSEHLL SVCQRLGISV QPARVAQATD KAAVERFFRT
LREQLLVALP GYKGPDVHHR GADVEEQAFY FLDELEELIR QWVADCYHRQ PHGGLVVPEV
PGLAVSPLEM FAHGVARAGH LQVPARADLV FDFLAVEWRT IQHYGVEIGG LRYDGPALSP
YRNRTSPHTG VHAGKWPIRV DADDVSRVYF QDPADQRWHV LRWEHADALG GPFSADALAY
ARQLATATDR FPDTRRALAR LLERWDAGLA GNRAERRMAV RLSERRLRLV GDTAVPDEPA
PAVASPDQDR SAEETAGDDD RDDELGAPFP GEDDFYADAM EIV
|
|---|
| |