| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_0465 |
|---|
| Symbol | |
|---|
| ID | 3903196 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | + |
|---|
| Start bp | 543934 |
|---|
| End bp | 545091 |
|---|
| Gene Length | 1158 bp |
|---|
| Protein Length | 385 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 637877796 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_479580 |
|---|
| Protein GI | 86739180 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3839] ABC-type sugar transport systems, ATPase components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.365708 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.194401 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCCGGA TCACGGAACC GGCCGACGGA CCCGCCGTGG TGACGGCCGC CACCGCGGGG
GTGCCGATCG AGATCGACGG GCTGGGCCGG TCGTTCGGCC CGGTCCATGC GCTGCGCGAC
GTCACGCTGA CGGTTGCGCC GGGGGAGATC GTCGCGCTGC TCGGACCGTC CGGCTCGGGC
AAGTCGACGC TGCTGCGGAT CTGCGCCGGG CTCGAGGAGC CGACGTCGGG TGATCTGCGT
TTCGGCGCGG TCAGCCAGCT TGGCGTCGCA CCCCACCGCC GGGACGTGTC CATGGTCTTC
CAGCATTTCG CGCTCTACCC GCATCTGACG GCGCTGGAGA ACCTCACTCT GGCGTTGCGT
CACGGCCGCG GCCTGCCGAA GGCCGCGGCG GTGGCCCGGG CCCGTGAGAC GCTGGACATG
CTCGGCATCG GTGAGCTGGC AGCTCGCCGG CCCGCGAAGA TGTCCGGGGG CCAGCGCCAG
CGGGTCGCGA TCGGCCGGGC ACTCGCGACC CGGGCCCGGG TGATCCTGTT GGACGAGCCG
ATGTCGGGGC TCGACGCCCA GCTCCGGGTC GATCTGCGGG TCGAGATCGT GGGCCTGCTG
CGCCGGCTCG GCACCACCGC CCTGTTCGTC ACGCACGACC AGGCCGAGGC GATGGCGGTC
GGTGACCGGG TCGCGGTGCT CAGCGGCGGC CGGCTGCAGC AGATCGGGAC GCCCGACGAG
ATCTACGACC GGCCCGCCAC GCGCTTCGTC GCGGCGTTCA TCGGCAGCCC GCCGATGAAC
GTCCGGGAGG GACGCTGGCA TGACGGCCAA CTGCACGGGG ACGGATTCGC CCTGCCCGCC
CCCGCCGGCG CGACGGCATT CGGAGTCCGG CCCGAGCACC TGGTCCTGGT GGCGGCGGCT
TCCACTGGAT CGGGATCGGT ACCGGCGGAC GCCGTGGTGG CGCCGGTGGC GCTGGCGTCG
GACGCGCTGC GGGTAACCGG TGAGGTCGTG GTGAGCGAGC GGCTCGGGGC GGAGCGGACG
GTGTACGTCC GGACCTCCGC CGGGGTGCTC GCCGTCAGGG TCGACGCCGC TGAGGTGCCC
GGCGTGGGCA TGCGGGTCAC CCTGCGCGCA CCGCTGTCCA CCCTGACCTT CTTCGACGCC
GCCGGCGCCC GGATCTGA
|
|---|
| Protein sequence | MTRITEPADG PAVVTAATAG VPIEIDGLGR SFGPVHALRD VTLTVAPGEI VALLGPSGSG
KSTLLRICAG LEEPTSGDLR FGAVSQLGVA PHRRDVSMVF QHFALYPHLT ALENLTLALR
HGRGLPKAAA VARARETLDM LGIGELAARR PAKMSGGQRQ RVAIGRALAT RARVILLDEP
MSGLDAQLRV DLRVEIVGLL RRLGTTALFV THDQAEAMAV GDRVAVLSGG RLQQIGTPDE
IYDRPATRFV AAFIGSPPMN VREGRWHDGQ LHGDGFALPA PAGATAFGVR PEHLVLVAAA
STGSGSVPAD AVVAPVALAS DALRVTGEVV VSERLGAERT VYVRTSAGVL AVRVDAAEVP
GVGMRVTLRA PLSTLTFFDA AGARI
|
|---|
| |