| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_0460 |
|---|
| Symbol | |
|---|
| ID | 3903266 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | - |
|---|
| Start bp | 537943 |
|---|
| End bp | 538920 |
|---|
| Gene Length | 978 bp |
|---|
| Protein Length | 325 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 637877791 |
|---|
| Product | XRE family transcriptional regulator |
|---|
| Protein accession | YP_479575 |
|---|
| Protein GI | 86739175 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1396] Predicted transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.321413 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCTCCC CTGAATCGCA GCGTCCACGG ACGGCGGGCT CTCGGCGGAC GGTCGTCCGC
GGAGTCCGAG GAGTCCGCGG ACTCCTCGGC CGCGGGGTCC AGCCGTATGC CGAGGTTCAC
GGATGGCGGG GCGCCCGCCA TGGGCGCGGC AACCCGCCTC GCCCTCCGGC GAAGGAGGCG
TTCGACCCGG TGGCGGCCCT GAATGTGCGC GATCTCGGCG ATTTCATCCG CGATCAGCGG
CACAGCGCAC AGATCTCCCT TCGTCAACTC GCCAAGCAGG CCGGGGTGAG CAACCCTTAC
CTCAGTCAGA TCGAGCGAGG CCTCCGGCGG CCGTCCGCGG AGATTCTTCA GCAGATCGCG
AAGGCGCTCC GCATCTCCGC CGAAGTGCTC TACGTGCAGG CCGGAATTCT GGAGGAACGG
CAGGGCGAAG AGAACGTCAT GGCTGCCGTG CTGGCGGACG AATCCCTGTC CGAACGACAG
AAGCAGGTCG TGCTCGACAT CTACGAGGCG TTCTGCCGGG AGAACGCCAT CGCGGCGCGG
GCCGGCCGCG GCCACCCGGA CGGCGACGCC GAGGCCGGGC CGCGCGGGTT CGTCCCCGGC
GAGCCCGCCG CCCCGACCGC GGGTCCGGCC GCCATCGGTG ATTCGGCATC CGCACGGGGT
CCGGCCGCCA CCGCGGGAGC GACCTTCGCG GAGCCGACGA CGAAACGGAG ATCCGCCCGA
CAGGCGTCGG CGACATCCCG GGGCGGCACC ACCACCGCGG CGCGGTCGGC CTCGTCGGAC
GGTACGGGTA AGCCGTCCCC GGGGACCGCC CCGGGCCGCA CCAGGCGATC GAAGGCCACG
GGAGGCGAAC CGGCGGCGGC GACGAGGACC GAGAGCGGTC CGATCACCGG CGCTCCCCCC
GCGTCCCTAC CCACACCGGC AGCACCGGCA GCACCGGCTC CGCAGCCGAC CACCGACAAC
CCGGTCGATC AGACCTAG
|
|---|
| Protein sequence | MASPESQRPR TAGSRRTVVR GVRGVRGLLG RGVQPYAEVH GWRGARHGRG NPPRPPAKEA
FDPVAALNVR DLGDFIRDQR HSAQISLRQL AKQAGVSNPY LSQIERGLRR PSAEILQQIA
KALRISAEVL YVQAGILEER QGEENVMAAV LADESLSERQ KQVVLDIYEA FCRENAIAAR
AGRGHPDGDA EAGPRGFVPG EPAAPTAGPA AIGDSASARG PAATAGATFA EPTTKRRSAR
QASATSRGGT TTAARSASSD GTGKPSPGTA PGRTRRSKAT GGEPAAATRT ESGPITGAPP
ASLPTPAAPA APAPQPTTDN PVDQT
|
|---|
| |