| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_0379 |
|---|
| Symbol | |
|---|
| ID | 3903430 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | + |
|---|
| Start bp | 448713 |
|---|
| End bp | 450674 |
|---|
| Gene Length | 1962 bp |
|---|
| Protein Length | 653 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637877708 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_479495 |
|---|
| Protein GI | 86739095 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAGCC CGGTACCGGC ACCGCGCCGC GGCCCGGCCC CGACGGCCGG GCCCGCTCGG
TTCTTCGTGG GCCCGGGCGC GACGGAGAAG TCGATGGACT TCGCCGCGTC GAGCCGCCGG
CTGCTCGGAC TGCTGCGACC GCAGCGCCAC CTGCTGATCG CCGTCGTGGT CCTGGCGACG
TTGAGCGTCG GCCTGAGCGT GATCGGTCCT CGCCTGCTCG GCCACGCCAC CGACCTGGTG
TTCGCGGGGA TCTTCAGTCG GCGGCTGCCA GCCGGCAGCA CGAAGGAACA GGCGGTCGCG
CAGCTGCGTG CCACCGGCCA CGGTACCCAG GCGGACCTGC TCGCCTCGCT CGACGTGACC
CCCGGTCATG GCATGGACTT CGATGCCATC GGTGTCGTGC TGCTGGGGGT CGTGGTCGTC
TACGCGGTGT CCGGATTGTG CGGTGTGCTC CAGGCCCGGC TGGCGAACCT GGCCCTGCAG
AGAGTGATCA GTGATCTGCG CCGCGACGTC CAGGCGAAGA TCTCGCGGTT GCCCGTCCGT
TACTTCGACG GTCAGCCGCG AGGCGAGGTG CTCAGCCGGG TCACCAACGA CATCGACAAC
TTCGGGCAGA GCCTGCAGCA GAGCATGTCG CAGATTGTCG CGTCGACGCT GACGATCGTG
GGCGTGCTAT CGATGATGCT CTGGATCTCC TGGATCCTCG CCCTGATCGC GCTGGTCACG
GTGCCAGTGT CGATCATGAT GGCGACCCGG GTCGGCAAGC TGGCTCAGCC CCAGTTTGTC
GCCCAGTGGC GGATCACCGG TGGTCTCAAC GCCCATATCG AGGAGATGTA CACCGGGCAC
ACGCTCGTGC GGGCGTTCGG CCGGCAGGAG GAATCCGCGG AGATCTTTCG TGAGCAGAAC
GAGCGGCTCT ACGCCGCCAG TTGGCGCGCG CAGTTCATCT CCGGTCTCAT GCAGCCCTCG
ATGTTGTTCA TCGGAAACCT GAACTACGTG CTGGTAGCTG TGATCGGCGG CCTGCGGGTC
GCGTCCGGCT CGCTGTCGAT CGGTGACGTC CAGGCGTTCA TCCAATATTC TCGGCAGTTC
AGCCAGCCGT TGTCCCAGGT TGCCAGCATG GCGAACCTGG TGCAGTCCGG GGTGGCCTCC
GCGGAGCGGG TGTTCGACCT GCTCGACACC GTCGAGCAGG AACCCGACCG GGCGGTTCCG
GCGCATCCGG AGCGGCTTCG TGGCCGGGTG GCCTTCGAAC GCGTCTCCTT CCGCTACGAA
CCGAACAAGC CGTTGATCGA GGACCTGTCA CTTGTCGCGG AACCTGGTCA CACCGTCGCG
ATCGTCGGGC CGACCGGCGC CGGCAAGACC ACTCTGATCA ACCTGCTGAT GCGCTTCTAC
GAGGTCACCG GCGGACGGAT CACCTTGGAC GGGGTCGATG TCGCGGCGAT GTCGCGGGAT
GAACTGCGGG CCAGCATCGG CATGGTCCTG CAGGACACCT GGCTGTTCGG CGGAACGATC
GCGGAGAACA TCGCCTACGG TGCGGAGGGC GCCACCCACG AGCAGATTGT GGCGGCGGCC
CGCGCCGCGC ACGTCGACCG GTTCGTCCGC ACTCTTCCCG CGGGTTACGA CACCGTGCTC
GACGACGAGG GGGTCGGCGT GAGCGGCGGG GAGAAGCAGC TGATCACCAT CGCCCGCGCC
TTCCTCGTGG AACCTCTGAT CCTGGTTCTC GACGAGGCGA CGAGCTCGGT GGACACCCGT
ACCGAGGTCC TCATCCAACG GGCGATGTCG ACCCTGCGGG CGGGGCGGAC CGCGTTCGTC
ATCGCGCATC GGCTGTCGAC CATCCGGGAC GCGGACACCA TTCTCGTGAT GGAGAACGGA
GCCATCGTCG AACAGGGCAC CCACACCGAG CTCCTGGCCG CCGATGGCCC ATACTCCCGG
CTGTACCAGT CCCAGTTCGC CCAGGCCGTC GTCGAGATCT GA
|
|---|
| Protein sequence | MSSPVPAPRR GPAPTAGPAR FFVGPGATEK SMDFAASSRR LLGLLRPQRH LLIAVVVLAT
LSVGLSVIGP RLLGHATDLV FAGIFSRRLP AGSTKEQAVA QLRATGHGTQ ADLLASLDVT
PGHGMDFDAI GVVLLGVVVV YAVSGLCGVL QARLANLALQ RVISDLRRDV QAKISRLPVR
YFDGQPRGEV LSRVTNDIDN FGQSLQQSMS QIVASTLTIV GVLSMMLWIS WILALIALVT
VPVSIMMATR VGKLAQPQFV AQWRITGGLN AHIEEMYTGH TLVRAFGRQE ESAEIFREQN
ERLYAASWRA QFISGLMQPS MLFIGNLNYV LVAVIGGLRV ASGSLSIGDV QAFIQYSRQF
SQPLSQVASM ANLVQSGVAS AERVFDLLDT VEQEPDRAVP AHPERLRGRV AFERVSFRYE
PNKPLIEDLS LVAEPGHTVA IVGPTGAGKT TLINLLMRFY EVTGGRITLD GVDVAAMSRD
ELRASIGMVL QDTWLFGGTI AENIAYGAEG ATHEQIVAAA RAAHVDRFVR TLPAGYDTVL
DDEGVGVSGG EKQLITIARA FLVEPLILVL DEATSSVDTR TEVLIQRAMS TLRAGRTAFV
IAHRLSTIRD ADTILVMENG AIVEQGTHTE LLAADGPYSR LYQSQFAQAV VEI
|
|---|
| |