| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BTH_II1434 |
|---|
| Symbol | |
|---|
| ID | 3844533 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia thailandensis E264 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007650 |
|---|
| Strand | - |
|---|
| Start bp | 1694011 |
|---|
| End bp | 1698672 |
|---|
| Gene Length | 4662 bp |
|---|
| Protein Length | 1553 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637838736 |
|---|
| Product | YD repeat-containing protein |
|---|
| Protein accession | YP_439630 |
|---|
| Protein GI | 83717122 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[S] Function unknown |
|---|
| COG ID | [COG3209] Rhs family protein
[COG4104] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.16383 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGCGAAG TGCAGAGTAG CGCGCCGCCG GACAGCCGGC AGAAGCTCGC GGCGCTAGCG
CAACGAGGCA GCAATGCGGA CGCCGTGCAG ACGGTGTCCA ACATGGGGCT CGCGATCAAC
GCGGCGCAAG TCACGGCGGC CGGGACGAGC GCGTGGGCGG CCGGCACGTT CCAGTGCTTC
GCCGGGCGCG TGATCGCGCC GCTTGGCGGC GCGATGCTCG GCGGCGCGCT CGCCGAGGCG
GTCGGCGCGG ACCGCCCGGT CACATGGGTG CTGGGCAAGA TGGGGCTTCC GGCGGTCGCG
AAGCCCGGCA AGGCGCCGGC TCGCGTCGGA CACAAGATCG TCCACGAGAA CGCATTCATC
GGCGCGCTGA CCGGCCTGCT GGCGGGGATC GCGGTCGGCG TGGCCATTGC CGCCGCGGCG
GCCGCGATCG TGGCGACGGG CGGCGCCGCC GCGGTCGCCA TCGCGGCGGC CGGCCCGTTC
GTCGTCGGGT TCGTCTCGGG CGCGGTGGGC GGATTCGTCG GCGCGGCGGT GGCCAAGGGC
ATCGGCCATA CCGGCTCGGT GACGGGCGCG ATCGCGGACG GCTCGCCCAA CGTCTCGTTC
GAAGGGGCGC GGGTTGCCCG CGTGACCGAC CCGGTGACAT GCAGCAAGGA CCCCGGCACG
CCTCCGCCGC AGATCGCGCA GGGCAGCCTG ACCGTATCCG TCAACGGCCT GCCGCTCGCG
CGGATCGGCC ACAAGATCAC GTGCTCGGCG GTCATTCAGG AAGGCTGCAC GACGATCAGC
GCGGACGAGA CGACCGGCAC GTTCGGCAAG ATCGACGCGA ACGTGTCGCT TCTCGAGCAG
TTGGTGCTGA CGGCCACCGA CGTCATCATG ATGCGTTCGG CGACCAAGGA AGGCGGCTTG
CTGGACGGCG TGCTGCGCGA GCTGCTCGGC GAGCCGATCG ACATGGCGAC GGGCGATTAC
GCCGACTACC GGACGGATTT CACGTGGCCG CACGTGCTGC CGCTCACGAT TTCCCGTGCG
TACGCGGGGC GGCAGCCGGT CGAGGGGCTG CTCGGCGACA GGTGGATCAG CAACTGGTCG
CAGCGCCTGC GATATCGGCG GCCGGCGGAC GGCCCGGCCA CCGTCACGTT CTTCGACGCG
GATGGCCAGC AACTCGTGTA TCCGGTTCCG CACGAGCCGT TCAACGCGAT CAACTTCTGG
GCGCCGCACT ACGCGTTGCA CGGCAATCGC GCGCGGGCCG TCGTTTTCGA CGAGCGCTCG
CAGCAATCGC TGATTTTCGA GCCGGCGCAT GCCGAGGACG ACGTCGCCCG CCTGACCCGC
ATCGAGGACC GCAACGGCAA CACGATCGAC TTCGAGTACA ACGCGCTCGG CCGGCTATGC
ACGGTGCGGC ACAGCGGCGG GATGACGCTG TGGGTCACCT GCGATTCCCG CGGGCTGTTG
CAGAGCGTGT CGGAGCGGCC GGGCGGGGAG GGCGAACTGG TCCGCTATCG TTTCGACGGC
AAGCGCCTCA CCGACGTTCA TAGCCGCTTC CAGGGCGAAT TTCATTTCGG CTATACCGAC
GAGGGCTGGC TCAATCACTG GCGCGACAGC GGCGCCACCG AGGTTGCGCT GCGCTATGAC
GAGCGGGCAA GGGTGATCGC CACGCGCACG AATACCGCGC TGTACGACGA TCGCTTCGAG
TATGACGACG AGCAACGGCG GACGACGTAC ATCGACGCGC TCGGGCACCG GCATCAACGC
TGGTTCGATG CGCAGAACCG GCTGATTCGG TCGCAGGACC CGCTGGGCCG GGTGATGCAT
GCCAGTTTCG ACGAGCGGGG CTGGCTGAGC GCGCGGACGG ACCCGATCGG CCGAGTCAGC
CAGTACCGTT ACGACGCGCG CGGTCGCCCC GTGAAAGTCA TCGACGTCTA CGGACGGGAG
AGTCGATATC GATGGAATGG GGCCGGGCAG TTGATCGAGC GAACCGATCC GTTCGGCGCG
CTGCGCTGGC ATTTCAGCGC AGAGGGCAAT CTGGTGGCGT TCGAGGGGCC GTCAGGCGAG
ACGCGTTTTC GATACGACCC GCGTGGCCTG CTCGTCAGCC GGACTGATCC CGATGGCGCG
ACGTACGCAT GGCGCCATGA TGAAGCAGGG CGTCCCGACA GATGGACCGA TCCGCTCGGC
CGGCACACCC ATCTCGACCG CGATCGATAC GGCCGACTGA GGAGCCGAAC CGATGCGGCC
GGTCATCGGA CGGTCTATGG CTATGAGCCG GGCCCGTCCA ATCCGCGCGA AGCGCTTAGC
AGCGTGACGT ACCCGGACGG CGCAATCGCG CGCTTTCACT ATGACTCGGA AGGCATGTTG
CGGGAGGCGG TGAATCCGCT GGGACATGGC ATCCGCTATA CGTGGGGCGC ATTCGATTTG
CTGGCGAGCG TCACGGACCC GTCGGGGGCG GTCACGCAAT ATCATCGCGA TGGCACTGCC
CGCCTGACGG GTGTGACGAA CGCGCTGGGG CAGCGATGGA CGTTGGAGCG GGACGCCGCG
GGACAAGTGA TCGCCGAAAC GGATTGGCGC GGGCGCTGCA CGCGATATGT GCGTAACCGG
CTAGGGCAGG TCACCGAGAA GCATCTGCCG GACGGCGTCG TGCTGCGCTA TGAATATGAC
GCATACGACC GGTTGATTTC CCTTGCCGGG CCGCTGCAGA AGCATACGTT CGCTTGGGGA
TCGCGCGGGC AACTGACCCG AGCCCAGGTT TGGGAGCGTA GCGATGACGC GGATGCGTGG
CGGGCCGACA ACGACGTATG CCTGGAATAC GACGACGCAT TCCGGTTGAT CGAGGAAAGC
CAGAGCGGGC AGGCGATCCG TTACGAATAT GACGTGATGG GGCGGCCCGC GTCGCTCGGT
ACGCCGAGCG GGCAGACGCG TTGGCAGTAC GATCTCGCCG GCCAGCTCGA CGTGATCGAG
AGCAACGGCC ACCAATTCCG CTTCGGCTAC GACGTGCTCG GCCGGGAAAG CCATCGCCGC
TATTTGCCGA CGGAGCAACG GCGGAACTGG CAACCGGAAT GGGCGGATCG CTATCCGGAC
GGTTTTGCGC AACGGCAGGC GCATGACGCG CGAAGCCAAT TGACCTCGCA GGTATTCGGG
GCGCTGCCTT GGCACGACGA GGTCGCGCCC GAAGCCTTTG GCCCGCAGCG CGCCCGGCAT
TACGAATGGG ATGTCGCGGG CCACTGCGTC GGCATGCAGG AAGAACGCAA GGGCCTGCCT
GTCGAAGCGG GCCGCTGGCG GTACGACGCT CGCGGCCAGA TGGTCGACGC TTACCACGAG
CGCACCGAAA GTCGAAGCGC TCGGGAGCGT TACCGATACG ACGCGCTCGG CCATGTGGTC
GAGCAGCAGA TCGATGGCGG CGAAATCCGC ACGCATGACT ACCTGGGCGA TCAACTGATC
AGTGCGGGGC CGAACGTCTA CAAATACGAC GCGCGTGGGC GCATGGTCGC GCGCACCGAA
CTGCGCGACG GCTTCCGTCC GCGCTCATGG CGGTATCGCT GGGACGATTT CGACCGCCTG
AGAGAAGTGA CGACACCCGG CGGCGAACGC TGGGCGTATC GCTACGACGC GTTTGGCCGG
CGCATCAGCA AGGTTTGCAC GCATGGGGGC CGCCGGAACC GTTTGAAGCG TGCCGCCTAT
TTGTGGTGCG GAAGCCGAAT GATCGAGGCC TGGCGAACCT ATGACGAGCG CGACGGATCG
CGGCACGATA TCCAGCGTTG GCATTATCGG CCGAGCACCC ACATACCGCT TGCTCAGGAA
CGGCTGCGCT TCGACGATCA ACCTGATCCG CAAACGAGCG AGTGGTATCC GCTCGCCTGT
GATCCCAATG GCGCGCCGCA TACGCTGTAC AGCAGCGACG GCAGGGCGCT GTGGCGCGCG
CGGCGGACGG CATGGGGCGA CACGGCCGGC GACGACGGGC GTGATTCGCT TCGTAGCGCG
GTGCGAGAGC AATTGCGATT GGGGCATCGG GATAGTGACG AATTCGATCC GCCAGACTGC
GAATTGCGAT TCCCGGGGCA GTGGGCAGAT GAGGAAAGCG GGCTGCACTA CAATTTGCAC
CGCTACTACG ACCCATCGAC CGGCCAGTAT CTCAGCGCCG ATCCGGTGGG GCTGGCGGGC
GGGTTGCGAA CGCACGCTTA CGTGCATGAT CCGATGCAGT GGGGCGATCC GTTCGGTCTG
CAGGGATACG ATACGGTGAG AAACCATCGG GCGGGCAACA AGCAGATCGA TTACGACGGT
CAACGCTGGA ACGTCCCGAA AGGCAAGAAT CCGACGGAGG TCATTCCGGA ATCGGACCCG
ATCGGAAAGA AGCTCCAGGA TGCGACGGAC AACGCTGCTG CCCGCTGGAA CACGTCGAAT
CTCACGCCGG CGGAAAGCAA TGCGATCGAA AGCGCTCGAG CATCGGGCGA ATACTGGCGC
GCGAACCTGC TTCAGCAGCA GGCCAAGGGG CGCTGGATCG AATCCCAGGT CAAGAGCGAT
CCGGACATCG CGGGGATGGA TCTGGATTGG AATCGCGTGG GAGTCGATGC GGTCGATCCG
AATACGGGGT TGAGTTATGA CATCATGTCG GGTAGCAAGA GCAACATGGA TGCGCACGCG
ATGCGGATGT CCGATGTTGT TTTCAGAATG ATCACTTTCT AG
|
|---|
| Protein sequence | MGEVQSSAPP DSRQKLAALA QRGSNADAVQ TVSNMGLAIN AAQVTAAGTS AWAAGTFQCF
AGRVIAPLGG AMLGGALAEA VGADRPVTWV LGKMGLPAVA KPGKAPARVG HKIVHENAFI
GALTGLLAGI AVGVAIAAAA AAIVATGGAA AVAIAAAGPF VVGFVSGAVG GFVGAAVAKG
IGHTGSVTGA IADGSPNVSF EGARVARVTD PVTCSKDPGT PPPQIAQGSL TVSVNGLPLA
RIGHKITCSA VIQEGCTTIS ADETTGTFGK IDANVSLLEQ LVLTATDVIM MRSATKEGGL
LDGVLRELLG EPIDMATGDY ADYRTDFTWP HVLPLTISRA YAGRQPVEGL LGDRWISNWS
QRLRYRRPAD GPATVTFFDA DGQQLVYPVP HEPFNAINFW APHYALHGNR ARAVVFDERS
QQSLIFEPAH AEDDVARLTR IEDRNGNTID FEYNALGRLC TVRHSGGMTL WVTCDSRGLL
QSVSERPGGE GELVRYRFDG KRLTDVHSRF QGEFHFGYTD EGWLNHWRDS GATEVALRYD
ERARVIATRT NTALYDDRFE YDDEQRRTTY IDALGHRHQR WFDAQNRLIR SQDPLGRVMH
ASFDERGWLS ARTDPIGRVS QYRYDARGRP VKVIDVYGRE SRYRWNGAGQ LIERTDPFGA
LRWHFSAEGN LVAFEGPSGE TRFRYDPRGL LVSRTDPDGA TYAWRHDEAG RPDRWTDPLG
RHTHLDRDRY GRLRSRTDAA GHRTVYGYEP GPSNPREALS SVTYPDGAIA RFHYDSEGML
REAVNPLGHG IRYTWGAFDL LASVTDPSGA VTQYHRDGTA RLTGVTNALG QRWTLERDAA
GQVIAETDWR GRCTRYVRNR LGQVTEKHLP DGVVLRYEYD AYDRLISLAG PLQKHTFAWG
SRGQLTRAQV WERSDDADAW RADNDVCLEY DDAFRLIEES QSGQAIRYEY DVMGRPASLG
TPSGQTRWQY DLAGQLDVIE SNGHQFRFGY DVLGRESHRR YLPTEQRRNW QPEWADRYPD
GFAQRQAHDA RSQLTSQVFG ALPWHDEVAP EAFGPQRARH YEWDVAGHCV GMQEERKGLP
VEAGRWRYDA RGQMVDAYHE RTESRSARER YRYDALGHVV EQQIDGGEIR THDYLGDQLI
SAGPNVYKYD ARGRMVARTE LRDGFRPRSW RYRWDDFDRL REVTTPGGER WAYRYDAFGR
RISKVCTHGG RRNRLKRAAY LWCGSRMIEA WRTYDERDGS RHDIQRWHYR PSTHIPLAQE
RLRFDDQPDP QTSEWYPLAC DPNGAPHTLY SSDGRALWRA RRTAWGDTAG DDGRDSLRSA
VREQLRLGHR DSDEFDPPDC ELRFPGQWAD EESGLHYNLH RYYDPSTGQY LSADPVGLAG
GLRTHAYVHD PMQWGDPFGL QGYDTVRNHR AGNKQIDYDG QRWNVPKGKN PTEVIPESDP
IGKKLQDATD NAAARWNTSN LTPAESNAIE SARASGEYWR ANLLQQQAKG RWIESQVKSD
PDIAGMDLDW NRVGVDAVDP NTGLSYDIMS GSKSNMDAHA MRMSDVVFRM ITF
|
|---|
| |