| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rru_A3656 |
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| Symbol | |
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| ID | 3837112 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodospirillum rubrum ATCC 11170 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007643 |
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| Strand | - |
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| Start bp | 4196060 |
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| End bp | 4198018 |
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| Gene Length | 1959 bp |
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| Protein Length | 652 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 637827780 |
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| Product | polysaccharide biosynthesis protein CapD |
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| Protein accession | YP_428737 |
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| Protein GI | 83594985 |
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| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1086] Predicted nucleoside-diphosphate sugar epimerases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.219229 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGGTCGC TGTTTACCCC GATGCCGCCC CGGGCGCGCA TCGTCTTCGC CCACGACGTG
GTGATGGCGG CGCTGTCCTT CGTGATCTCG CTGTATCTGC GCCTGGGTGA CGGCCTGATC
CGCTATGTGC CGCTACCCGA TCTGGGGCGC GAGGCCGCCC TGTTCGCCGC TTGCGCGGCG
GTCGCCTTTT ACACCCAGCG CATGTATGTG GGCATCTGGC GCTATGCCTC GGTCGATGAC
CTGATCGCCC TGTTGCGCGG CGCCACCCTG ACCCTGGTGC TGTTCCTGCC CGCCGCCTTT
CTCATCACCC GCATGGAATA CGTGCCCCGG TCGGTGCTGG TCATCAATTG GGTGGTGCTG
ATGGCCCTGC TGGGCGGCCC GCGCTTTTTG TACCGGCTGT TCAAGGACCG CAAATTCCAG
CTGCGGCGCG CCCGCTCGCG CTCGGCGATC CCGGTCTTGC TGGTCGGGGC CGGTGACGGC
TGCGAGATGT TCTTGCGCTC GGTCGCCCGC GAGACCGACA GCCCCTATCT GCCCGTCGGC
ATCCTGTCCG AGCAGGAAAC CCGAGTCGGG CGCAATCTGC GCGGCGTCGA GGTTCTGGGC
ACCTTGGATC GTCTGGCCGA GATCGTCGTC CGGCTTGAAC GCTGGGGCGA GCGGCCGCGC
AAGCTGATCT TGACCTCCGA GACCCTCGAT CCCGCCCAGG TGCGCGGCCT GCTTGACGCC
TGCGACGCCT TGGGGCTGTC GCTGGCCCGG TTGCCCCGGC TGATGGAGCT GCGCGACGGC
GGCGCCGATA GCCTGGAGGT GCGCCCGGTG GCCATCGAGG ATCTGCTGGG CCGGCCCCAG
GCCGTGCTTG ACCGCGCCCC CGTCGTCGCC CTGGTCGGCG GTCGCCGGGT GCTGGTCACC
GGCGCCGGCG GCTCGATCGG CTCGGAGCTG GTGCGCCAGA TCGCCGCCCT CGACCCGGCC
CGCCTGATCC TGGCCGACAG CAGCGAATTT GCCCTCTACA CCATCGATAT GGAGATCAAC
GAGCGCTATC CGACGCTGTC GCGCCGGCCG GTGATCGCCG ATGTCCGCGA TGGCGACCGC
GTCGATCGGG TGATGGCCGA GGAAAAGCCC GAGCTGGTGT TCCACGCCGC CGCCCTCAAG
CATGTGCCGA TGGTCGAATT CAATCCGCTT GAGGGCCTGC GCACCAATGC CCTGGGCACG
CGCACGGTGG CCGAGGCCTG CCGCCGTCAC GGCGTTGGCA CCATGGTGCT GATCTCGACC
GACAAGGCGG TCAACCCGAC CAATGTGATG GGCGCCTCCA AGCGCATGGC CGAAAGCTGG
TGTCAGGCCC TTGACCTCGC CGAGCGAACG AGCGCGGCGG CCACCCATTT CGTCACCGTG
CGCTTTGGCA ATGTGCTGGG ATCGACCGGC TCGGTGGTGC CCTTGTTCCA GCGCCAATTG
GCCGCCGGCG GTCCGCTGAC CGTGACCCAT CCCGAAATCA CCCGCTTCTT CATGACCATC
CGCGAAGCCG TGGAGCTGGT CTTGCAGGCC GCCGCCCTGG GGTCGCGCGA GGAAAGCTAT
CGCGGCTCGC TGTTCGTGCT GGATATGGGC GAGCCGGTGA AGATCGCCGA TCTCGCCCGC
CAGATGATCC GTCTGGCTGG CCTCAAGCCC GAGGTCGATG TCCAGATCGC CTATACGGGC
CTGCGTCCGG GCGAGAAGCT GTTCGAAGAG ATCTTCCACG GCAAGGAAAC CTCGCTGCCC
ACGCCGACCG ACGGCGTGTT GGTGGCCGCG CCGCGCGTGC CCGATCCGGT GTTCCTGGGC
ATCCAGTTCG ACGCCCTGGC CAGGGCCTGC GCGGCGGGCG ACGAGGCGCA GGCCCGCGCC
GTGATCGCCG CCCTGGTCCC CGAATTCCAC AATCCCCCGG CCGAGACCAC GCCCCAACCC
TTTGAGGGCG AGTGCGCCCA GGCGCGCGCC GTGCTATAG
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| Protein sequence | MRSLFTPMPP RARIVFAHDV VMAALSFVIS LYLRLGDGLI RYVPLPDLGR EAALFAACAA
VAFYTQRMYV GIWRYASVDD LIALLRGATL TLVLFLPAAF LITRMEYVPR SVLVINWVVL
MALLGGPRFL YRLFKDRKFQ LRRARSRSAI PVLLVGAGDG CEMFLRSVAR ETDSPYLPVG
ILSEQETRVG RNLRGVEVLG TLDRLAEIVV RLERWGERPR KLILTSETLD PAQVRGLLDA
CDALGLSLAR LPRLMELRDG GADSLEVRPV AIEDLLGRPQ AVLDRAPVVA LVGGRRVLVT
GAGGSIGSEL VRQIAALDPA RLILADSSEF ALYTIDMEIN ERYPTLSRRP VIADVRDGDR
VDRVMAEEKP ELVFHAAALK HVPMVEFNPL EGLRTNALGT RTVAEACRRH GVGTMVLIST
DKAVNPTNVM GASKRMAESW CQALDLAERT SAAATHFVTV RFGNVLGSTG SVVPLFQRQL
AAGGPLTVTH PEITRFFMTI REAVELVLQA AALGSREESY RGSLFVLDMG EPVKIADLAR
QMIRLAGLKP EVDVQIAYTG LRPGEKLFEE IFHGKETSLP TPTDGVLVAA PRVPDPVFLG
IQFDALARAC AAGDEAQARA VIAALVPEFH NPPAETTPQP FEGECAQARA VL
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