| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rru_A3484 |
|---|
| Symbol | |
|---|
| ID | 3836937 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodospirillum rubrum ATCC 11170 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007643 |
|---|
| Strand | + |
|---|
| Start bp | 4009075 |
|---|
| End bp | 4010139 |
|---|
| Gene Length | 1065 bp |
|---|
| Protein Length | 354 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637827605 |
|---|
| Product | secretion protein HlyD |
|---|
| Protein accession | YP_428565 |
|---|
| Protein GI | 83594813 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1566] Multidrug resistance efflux pump |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.956784 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCAAAGG TCAAACATTT TTTCCCTGCC GGGCTCGCGC TGTCCATCGG CCTCATCGGT
GCCCTGCTCG TTCTCTATGC GTGGCACCTG CCGCCCTTCC GCAGCGCCGT CGAAACGACC
GACAACGCCT ATGTGCGCGC TCAGGTCACC ATGATCAGTC CGCAAAGCGC CGGCTATGTG
ACCGCGGTCA CCGTCCATGA TTTCCAGACG GTCAAGGCCG GCACGCCGCT GTTTCAGATC
GATGACCGGA TCTATGCGCA AAAGCTGAAG CAGGCCCAGG CGACCTTAGA AATGAAACGC
GCCGCCCTGG AGAATTCCGA GCAGAGCGAG CGGGCGGCGC AGGCGCGGAT CCGCTCCAGC
GAGGCCGAGA TCGCCAGCGC CATCGCCGCC CTGGATGTCG CCCGGTCCAC CGCCCGCCGC
ACCGAGGCTT TGCTGGCGCG CGGCGTCTCG ACGCAAAGCT CCGCCGATCA GGCCCGCTCC
ACCCTGGCCC AGGCCGAAGC CCTGGTACAC AAAAGCCAAG CCGCCCTTGA CGTTTCCCGC
GAGGATCTGC GCTCGATCCG CGTTAATCGG GACTCGCTTC AGGCCGATAT CGCCAATGCC
CAGGCGGCGG TCGAACTGGC GACGATTGAT TTGCACAACA CCAGCATCGT CGCGCCAATC
GATGGCACGC TGGGCGAGAT CGGGGTGCGG TTGGGGCAGT ATGTTTCGGC CGGAACCCAG
CTCGCCGCCC TGGTGCCCGC AAGACGCTGG GTCATCGCCA ATTTCAAGGA AACCCAGTTG
GCCGGCATCC AGATCGGTCA GGCGGTGAGC TTTCGCGTCG ATGCCCTGCA GGGGACGGCC
CTGGCCGGGC ATGTCGAAGC CTTTTCGCCC GCCACGGGCT CAGAGTTTAC CGTGCTGAAA
TCCGACAACG CCACGGGCAA CTTCACCAAG GTCACCCAGC GGCTTCCCGT TCGCATCGCC
ATCGATCCCG ATCAGGCGCA GGCCGCCCTG TTGGCGCCGG GAATGTCGGT GGTGGTGCGC
ATCGATACCG CCCCATCCGA GAGGGACGGA AAGCACCCGT CTTAA
|
|---|
| Protein sequence | MSKVKHFFPA GLALSIGLIG ALLVLYAWHL PPFRSAVETT DNAYVRAQVT MISPQSAGYV
TAVTVHDFQT VKAGTPLFQI DDRIYAQKLK QAQATLEMKR AALENSEQSE RAAQARIRSS
EAEIASAIAA LDVARSTARR TEALLARGVS TQSSADQARS TLAQAEALVH KSQAALDVSR
EDLRSIRVNR DSLQADIANA QAAVELATID LHNTSIVAPI DGTLGEIGVR LGQYVSAGTQ
LAALVPARRW VIANFKETQL AGIQIGQAVS FRVDALQGTA LAGHVEAFSP ATGSEFTVLK
SDNATGNFTK VTQRLPVRIA IDPDQAQAAL LAPGMSVVVR IDTAPSERDG KHPS
|
|---|
| |