| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rru_A3097 |
|---|
| Symbol | |
|---|
| ID | 3836543 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodospirillum rubrum ATCC 11170 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007643 |
|---|
| Strand | + |
|---|
| Start bp | 3564389 |
|---|
| End bp | 3567190 |
|---|
| Gene Length | 2802 bp |
|---|
| Protein Length | 933 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637827212 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_428179 |
|---|
| Protein GI | 83594427 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4783] Putative Zn-dependent protease, contains TPR repeats |
|---|
| TIGRFAM ID | [TIGR02917] putative PEP-CTERM system TPR-repeat lipoprotein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.681672 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCACGGT CACTGAAACG GTTCTGGTCG ACGACAAGCG CCCTCGCCCT GGTCCTGGCG
CTCGCCGCCT GCAACGACGA GGCCAAAGAC AAGGCGCGGG CCTCGGCCAA GGCCTATGAC
AGCGCTATCA CCGCTTGGCG GGCCGGCGAC CAGAAGGCGG CGCTGATCCA TGTCAGCAAC
GCCCTCAAGG CGGCGCCCGA CAACCGCGAC GCCAAGATCC TGATGGGCGA GATCACGCTC
TCGGGCGGCG ATGTCTGGTC GGGCGAAAAG CTGCTCAAGG AGGTCCGCGA CGGTGGGGCG
CCGGCCGAGA CATGGCTGCG TCCCCTGGCC AAATCCCTAA TCCTTCAGCA GAAATTTGAC
GAAGCCCTGA CTCTTGCCCG CTCCATCCCG GAAACCGAGC TGGTCGGCGC GGTAAAGACC
ATCGAAGGCC TCGCCCTGTT TGGCAAAGGC CAGGACGGGG CGGCGCGGCT GGCCCTGGAC
AAAGCCCTCG ACATCGACCC GGCCGACAAG GACGCCCTGA TCGGCGCGGC CCAGATCGAA
ACCATGGCCG GCCATCAGGA CGCCGCCCGC GCCCTGCTCG CCCGAGCGGC GGCGGCGGCG
CCCGATGATG TCGATGTGCT GGTGGCCCAG GCCGATACCG CGCTCAGCGC CAATGATCCG
GCGGCGGCCG AGGGGCTTTT CTCCCAGGCC GCGGCCCGTC TGCCGCTCAA CCCGCTGATC
CGCCTGTCGC TGGCCCAGGC CCAGATCGAG GCCGGCAAGA ACGCCGAGGC CCGCCAGACG
CTCAATACGG TGCTGGCCGA TATTCCGGCC CACCCCTGGG CGCTGTACCT GCGCGGCCTC
ACCGCCTATC GCACCAACGA TATGACCGCC GCCGACAAGG ATCTGACCGC TGCCCTGGCC
TTGGCCAAGA CCCTGCGCCC GGCGATTTTC CTGGCCGGGG TGGTCAAATA CAACATCGGC
GAATACGAAC AGGCCTCGCG GCTGCTTGCC GGGCTGACCG AGACCGAGGG CAAAAGCAAC
AAGACCGCCG ATGCCGTGCG CGCCGCCGCC CTTTTGAAAC TGGGCCGCGA CGACGAAAGT
TATCGTCTGC TCCGCCCCTT GGCCGCCGGT GACGGCGAAA CCGCCGATCT TTACGCGATG
GCCGCCGTCG CCGCCCAAGG AGCCGCCGCC ATGGCCGACA GCGAAGGCTA TTACCAGAAA
GCCGTTGTTC TGCGCCCCGA CGACCCCGCC TTGCTGACCA ATCTCGGCAT AGTCAAACTG
GCGCGCGGCG ACACCACCGC CGGCGAAGAC ACCTTGAACC GGGCGGCCGA GCTTGAAGGC
GACGACAAGA AGGCGCTGCT GCTGCTGTTC TCCTCGTTGC TGCAGAAAAA GGACTTCGAC
AAGGCCGAGG CCCTGGCCGG GGACACCAAG CGGAAATATC CCGATCGCGC CTGGGGCTGG
ACGATGGACG GCATGATCCA GGCCAGCCGG GGCGACACCG CCATGGCGCG CGCCGCCTTC
GAAACCGCCG TTCGCAAAGA GCCAACGGCC GGTGACGCCG TGCGCAATCT GGCCCTGACC
GCCCTGCAGT CGGGCGATAC CGAAGGCGCC CGCGGCGTGG TCGAAGGCTA TCTGCGGACT
AATGCCGGGG ATTCGGCGAT GGCGATGATC GCCGCCGCCG TGGCCAATAA GCGCAATGAT
CTGGTCGCCG TCGAAAAATG GCTGCGTCAG GCCCTGGAGC GCGATCCGGC CAACATGGAG
GCCGCCAGCA ATCTGGCGTC GCTGCTGACC TCGACCTCCC GTCCCCAGGC GGCAATCATC
GTCGCCCAGG ACGCCCTGCG GATTTCTCCC GATACTCCGG CGGTGATGGA AGCCCTGGGC
AAGGCCCAAT TGCTGATCGG CGATTATACG GCGGCGGCCG ATGTGCTGCG CCGGGCGGTG
GCGATCAAAC CCAGCGGGCT GACCTATTAT CTGCTGGCGA CCGCCTATCT CAATCTCAAC
GACCCGCCCC GCCTCAAGGA GGCCCTGGAG TCGGTGGTCA AGCTGCAGCC CGATCATGTC
GATTCGCGGG TGATGCTGGC GACCATGATC GTTGATGGCG GGTCTTTGAG CGACGCCAAG
ACCGCCGTCG AGGGCGTGAC CACGGATTTC CCGGGCGATC CCCGGGCCCA GGAGGTTCGC
GCCCGCTATC TGGCCAAGGC CGAGGGGCCG GCCAGCGCCA TCACCTTCCT TGAAGCCTCG
CTGACCGATC CCAACACCCG TCCGCGCAAT CTCGTCATGC TGCTGGCCTC GGCCTATAAT
GAAAAGGGCG ATGGCGCCAA GGCAAGCAGC CTGCTTGAAG ACTGGGTGGC CAAGAACCCC
GATGACTACC CCGGCCGCCT GTCGCTGGCG ACCCAGCAGA TCGCCGCCAA TCAGTTGGAA
AAGGCCAAGA CGACCCTGGA AAAAGGGCTG GAGCGGGTTC CCAACGACTG GATCGCCCGC
AACAACCTTG CCGAGGTGAT GCTCCGTCTT GGCCAGACCT CGGCCGCCTA TGACCAGATC
GTCATCGCCC GACGCTCGGG GGGACCACAG CCGGCGCTGC TTGATACCGA GGGCCAGATC
CTGCTCAAGA TGGGCAAGGC CAGCGAGGCC GTCGAGATCC TGCGGCTGGC GACGATCGAT
CGCAACGCCC CGCCCACCTA TGGCCTGCAC CTCGCCCAGG CCCTGGCGGC GGCGGGCAAG
AAAGACGAGG CCGGCGAGCG TTTGCGGGCC TTGCTCGACA AGAACAACGC CTTCGAGGGG
GCCGAACAGG CCCGGGCGCT TTTATCCGAG TTGCAGGGAT GA
|
|---|
| Protein sequence | MARSLKRFWS TTSALALVLA LAACNDEAKD KARASAKAYD SAITAWRAGD QKAALIHVSN
ALKAAPDNRD AKILMGEITL SGGDVWSGEK LLKEVRDGGA PAETWLRPLA KSLILQQKFD
EALTLARSIP ETELVGAVKT IEGLALFGKG QDGAARLALD KALDIDPADK DALIGAAQIE
TMAGHQDAAR ALLARAAAAA PDDVDVLVAQ ADTALSANDP AAAEGLFSQA AARLPLNPLI
RLSLAQAQIE AGKNAEARQT LNTVLADIPA HPWALYLRGL TAYRTNDMTA ADKDLTAALA
LAKTLRPAIF LAGVVKYNIG EYEQASRLLA GLTETEGKSN KTADAVRAAA LLKLGRDDES
YRLLRPLAAG DGETADLYAM AAVAAQGAAA MADSEGYYQK AVVLRPDDPA LLTNLGIVKL
ARGDTTAGED TLNRAAELEG DDKKALLLLF SSLLQKKDFD KAEALAGDTK RKYPDRAWGW
TMDGMIQASR GDTAMARAAF ETAVRKEPTA GDAVRNLALT ALQSGDTEGA RGVVEGYLRT
NAGDSAMAMI AAAVANKRND LVAVEKWLRQ ALERDPANME AASNLASLLT STSRPQAAII
VAQDALRISP DTPAVMEALG KAQLLIGDYT AAADVLRRAV AIKPSGLTYY LLATAYLNLN
DPPRLKEALE SVVKLQPDHV DSRVMLATMI VDGGSLSDAK TAVEGVTTDF PGDPRAQEVR
ARYLAKAEGP ASAITFLEAS LTDPNTRPRN LVMLLASAYN EKGDGAKASS LLEDWVAKNP
DDYPGRLSLA TQQIAANQLE KAKTTLEKGL ERVPNDWIAR NNLAEVMLRL GQTSAAYDQI
VIARRSGGPQ PALLDTEGQI LLKMGKASEA VEILRLATID RNAPPTYGLH LAQALAAAGK
KDEAGERLRA LLDKNNAFEG AEQARALLSE LQG
|
|---|
| |