| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rru_A3064 |
|---|
| Symbol | |
|---|
| ID | 3836510 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodospirillum rubrum ATCC 11170 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007643 |
|---|
| Strand | + |
|---|
| Start bp | 3530089 |
|---|
| End bp | 3531780 |
|---|
| Gene Length | 1692 bp |
|---|
| Protein Length | 563 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637827179 |
|---|
| Product | isovaleryl-CoA dehydrogenase |
|---|
| Protein accession | YP_428146 |
|---|
| Protein GI | 83594394 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1960] Acyl-CoA dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.326905 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACGCAC TGCCCAAGGC AGCGGCCAAG GCCGAGGCTT CCCAGCGAAG CCTGATTCTG
CCCGACCTGC TGTATACCTG CGACCGCGCC TATAACACCG CCGCCCAGGC CTTGACCCAG
ATCCGCAGCA ATGTGGCGGC GCTGGTCTCG GTGGAGGACA AGATCGACGG CGGTCTGCTG
GAGATCCACC AACACGCCGC CCATGGGCTG GCGTGGTTCG CCACCTATGT CGAGGCGCTC
GGCGCCTTGC TGGACTGGGC CCACCGGCTG GAGGCCAAGG GCGGATTGGG CGAGTTGGAA
AGCCTGATCC TTCAGGGCGC CTATTCCGAA TACCTCCACC AGATCTTCGG CGGCCTGCCG
ATGAGCCAGG GGGAATTCGC CCGCCTCGCC GATTTCGGCA TCGAGGTGCG CGAGCGCGGT
CTGCTGCAAA CCCCCTATAC CACCTTGCTG CGCGAGCATG GCTTCAGCGC CCCGGTCAAG
GCGCGCATCG CCGCCCTGAT CGCCGATGGC CATTTCGGCG ACCCCGGCCT GGAAGACGAG
ACCCTGACCC TGGTGCGCGA GCAGTTCCGC CGCTTCGCCG AAGACAAGGT CGTGCCCCAT
TGCCACGAAT GGCACCTGAG CGACACCCTG ATCCCGCTCG ACGTCATCGC CCAGATGGCC
GAGATGGGCG TCTTCGGCCT GACGGTGGCC GAGGAGTACG GCGGCTTGGG TATGGGCAAG
ACGGCGATGT GCGTGGTGAC CGAGGAGTTG TCGCGCGCCT ATATCGGCGT CGGCTCGCTG
GGCACGCGCT CGGAAATCGC CGCCGAACTG ATCAGCCTGG GCGGCACCGA GGAGCAAAAA
CGCCAGTGGC TGCCCCGGTT GGCCAGCGGC GAGATCCTGC CCACCGCCGT TTTCACCGAA
CCCAATACGG GCTCGGACCT CGCCTCGCTG CGCAGCCGGG CCGAACGCGA CGGCGATACC
TATCGCGTCA CCGGGGCCAA GACCTGGATC ACCCATGCCG CGCGCTCGGA CCTGATGACC
TTGCTGGTGC GGACCAATCC CCAGGAGGGC GGCTATAAGG GGTTGTCGAT GCTGTTGGCG
GAAAAGCCGC GCGGCAGCGA TGAAGATCCC TTCCCGGCCA AGGGCATGGC CGGCGGCGAG
ATCAAGGTTC TCGGCTATCG CGGCATGAAG GAATACGAGC TGAGCTTCGA TGGCTTCGAG
GTTCCCGCGG CCAATCTGCT GGGCAGCGAG GAGGGCCAGG GCTTCAAGCA GCTGATGGCG
ACCTTTGAAA GCGCCCGCAT CCAAACGGCG GCCCGCGCCG TCGGCGTCGC CCAGAACGCC
ATGGAGGTCG GGCTGCGCTA CGCCCAGGAC CGCGTGCAGT TCGGCAAACC GCTCTACGCC
TTCCCGCGCG TTCACGGCAA GCTGGCCTGG ATGGCGGTGG AAACCATGGT CGCCCGCCAA
TTGACCTATC GGGCGGGCCG CGAAAAGGAC AGCGGCCGGC GCTGCGATAT CGAAGCGGGC
ATGGCCAAGC TGCTGGCCGC CCGCGTCGCC TGGTCGAATG CCGACAACGC CCTGCAGGTG
CATGGCGGCA ATGGCTATGC CGAGGAATAT CCGATCAGCC GCATTCTGTG CGACGCCCGC
ATCCTCAACA TCTTCGAGGG CGCCGCCGAG ATCCAGGCCC ATGTGATCGC CAGGGGGCTT
TTGAGCCGCT GA
|
|---|
| Protein sequence | MNALPKAAAK AEASQRSLIL PDLLYTCDRA YNTAAQALTQ IRSNVAALVS VEDKIDGGLL
EIHQHAAHGL AWFATYVEAL GALLDWAHRL EAKGGLGELE SLILQGAYSE YLHQIFGGLP
MSQGEFARLA DFGIEVRERG LLQTPYTTLL REHGFSAPVK ARIAALIADG HFGDPGLEDE
TLTLVREQFR RFAEDKVVPH CHEWHLSDTL IPLDVIAQMA EMGVFGLTVA EEYGGLGMGK
TAMCVVTEEL SRAYIGVGSL GTRSEIAAEL ISLGGTEEQK RQWLPRLASG EILPTAVFTE
PNTGSDLASL RSRAERDGDT YRVTGAKTWI THAARSDLMT LLVRTNPQEG GYKGLSMLLA
EKPRGSDEDP FPAKGMAGGE IKVLGYRGMK EYELSFDGFE VPAANLLGSE EGQGFKQLMA
TFESARIQTA ARAVGVAQNA MEVGLRYAQD RVQFGKPLYA FPRVHGKLAW MAVETMVARQ
LTYRAGREKD SGRRCDIEAG MAKLLAARVA WSNADNALQV HGGNGYAEEY PISRILCDAR
ILNIFEGAAE IQAHVIARGL LSR
|
|---|
| |