Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rru_A1111 |
Symbol | |
ID | 3833418 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodospirillum rubrum ATCC 11170 |
Kingdom | Bacteria |
Replicon accession | NC_007643 |
Strand | - |
Start bp | 1306656 |
End bp | 1307687 |
Gene Length | 1032 bp |
Protein Length | 343 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 637825200 |
Product | ribosomal large subunit pseudouridine synthase D |
Protein accession | YP_426199 |
Protein GI | 83592447 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.522532 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCCAGCA GCGACGACAG CAACGACCTG GACGACGGCT TCGATGACGA GGCAGCCGCC GCGCCGATCG TTTACGAGCG CGCCGTCGAC GCCGAGGCCG CCGGACAACG CCTGGATAAA TGGCTGGCCA CGGTCATCCC CACCCTCTCG CGCGCCCGCT TGCAGCAGTT GATCGGCGAA AAGCGGGTCA GCGTGAATGG CCAGACCATA GGCGAAGGGT CGCGCCGGGT CAAACCGGGT CAGACCGTCC GCGTTGAAGA GCCGCCGCCG ATCGCCGCCA CCCCCCAGCC CGAAGCCATC GCCCTCACCG TGGTGTATGA GGACGATGAT CTGATTGTTA TCGACAAGGC GGCGGGCATG GTCGTCCATC CCGGGCCGGG CAATCCCGAT CACACCCTGG TCAACGCCCT GCTCGCCCAT TGCGGCCCGT CGCTTTCGGG CATCGGCGGC GAGCGGCGGC CGGGCATCGT CCATCGCCTG GACAAGGATA CCAGCGGCCT GATGATCGCG GCCAAGACCG ACCTCGCCCA CCACGGGCTG GCCGAACAAT TCGCCTGCCA TTCGCTGACC CGGGAATATC TGTGTCTGGT CTGGGGACGC CCGCGACCGG CGGCCGGCAG CATCGACGCC CCTTTGGGGC GCCATCCGAC CCAGCGCAAG AAAATGGCGG TGGTCAGTCG CGGCGGAAAG CGCGCCTTGA CCCATTATCG GGTGGTTGGC GATGTCGAAG GAATCGCCTC GATAGTGAAG TGCACGTTGT CGACCGGGCG GACCCATCAA GTGCGCGTGC ATATGGCCCA TATCGGCCAC CCGCTTCTCG GTGACGCGGT TTATGGACAT AGAAATATTC CAAAGAAACT CCCGGGTGAT TTATCCGAGA GGATCGCGCG ACTGACGCGA CAGGCCTTAC ATTCGTTTCA TTTAGGGTTT TTGCATCCCC GCACCGGAGA ATCCCTCGAA TTTTTGTCAG AATTGCCCTT GGATATCAGT GCCGTAGCGT CAATTTCGAG TCGAAACGCA ATCAAACTCT AA
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Protein sequence | MASSDDSNDL DDGFDDEAAA APIVYERAVD AEAAGQRLDK WLATVIPTLS RARLQQLIGE KRVSVNGQTI GEGSRRVKPG QTVRVEEPPP IAATPQPEAI ALTVVYEDDD LIVIDKAAGM VVHPGPGNPD HTLVNALLAH CGPSLSGIGG ERRPGIVHRL DKDTSGLMIA AKTDLAHHGL AEQFACHSLT REYLCLVWGR PRPAAGSIDA PLGRHPTQRK KMAVVSRGGK RALTHYRVVG DVEGIASIVK CTLSTGRTHQ VRVHMAHIGH PLLGDAVYGH RNIPKKLPGD LSERIARLTR QALHSFHLGF LHPRTGESLE FLSELPLDIS AVASISSRNA IKL
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