Gene Rru_A1004 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRru_A1004 
Symbol 
ID3833563 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodospirillum rubrum ATCC 11170 
KingdomBacteria 
Replicon accessionNC_007643 
Strand- 
Start bp1190626 
End bp1191648 
Gene Length1023 bp 
Protein Length340 aa 
Translation table11 
GC content63% 
IMG OID637825093 
Productlysine-arginine-ornithine-binding periplasmic protein 
Protein accessionYP_426092 
Protein GI83592340 
COG category[E] Amino acid transport and metabolism
[T] Signal transduction mechanisms 
COG ID[COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain 
TIGRFAM ID[TIGR01096] lysine-arginine-ornithine-binding periplasmic protein 


Plasmid Coverage information

Num covering plasmid clones9 
Plasmid unclonability p-value0.670148 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGAAGA TGATCGCGGC TCTGGCCGCT TTCGGCGCGG CCGGCGTCAT CGCCAGCGGT 
TCGGCGATGG CCGCCAGCAC TCTCGACACG GTCAAAAGCC GCGGCGAAGT GACCTGCGGC 
GTCAACAACG GCCTGCCGGG ATTCGCGCTT CCCGATGACA AGGGGCATTG GACCGGCATC 
GACGTTGATA TCTGCCGGGC CGTTGCCGCC GCCGTTTTCG GTGATGCCAA AAAAGTGAAG 
TTCGTTCCGC TCAACGCCAA GGAACGCTTC ACCGCCTTGC AGTCCGGTGA AATCGATGTG 
CTGTCGCGCA ACACCACCTG GACGCAGACC CGGGACGCCT CGCTGGGCCT GATCTTCGCC 
GGGGTGAACT ATTACGACGG CCAGGGCTTC ATGGTGAAGA AGGAGCTGGG GGTTTCCAGC 
GCCAAGGAAC TCAACGGCGC CTCGATCTGT ATTCAGTCGG GCACCACGAC CGAGCTGAAT 
CTGGCCGATT ACTTCCGCGC CAACGCCATG ACCTACAGCC CGGTGGTGTT CGACACCTCC 
GACCAGACCG TTCAGGGCTT CGCCGGTGGC CGCTGCGACG TGCTGACCTC CGACCAGTCC 
CAGCTTTACG CGCTGCGCAT CAAACTTGAA GATCCCAAGA GCGCCATCGT CCTGCCCGAG 
GTGATTTCCA AGGAGCCTTT GGGCCCGATG GTGCGCCAGG GCGATGATCA GTGGCTGAAC 
ATCGTGCGTT GGTCGCTGTT CGCCCAGCTT AACGCCGAGG AACTGGGCGT GACCTCGGCC 
AATGCCGACG AGGTCAAGGC CGGCACCGAC CAGAACGTCA AGCGTCTGCT GGGCACCGAA 
GGCGAAATGG GCAAGCAGCT CGGCCTGGGC AACGACTGGG CCTATGCCAT CGTCAAGCAG 
GTCGGCAATT ACGGCGAGAT GTTCGAGCGC AACATCGGCA AGGGCTCGCC CCTCGAGATC 
GAGCGCGGGC TGAACGCCCT GTGGAACAAG GGTGGCATCC AGTACGCCCC GCCCATCCGC 
TAA
 
Protein sequence
MKKMIAALAA FGAAGVIASG SAMAASTLDT VKSRGEVTCG VNNGLPGFAL PDDKGHWTGI 
DVDICRAVAA AVFGDAKKVK FVPLNAKERF TALQSGEIDV LSRNTTWTQT RDASLGLIFA 
GVNYYDGQGF MVKKELGVSS AKELNGASIC IQSGTTTELN LADYFRANAM TYSPVVFDTS 
DQTVQGFAGG RCDVLTSDQS QLYALRIKLE DPKSAIVLPE VISKEPLGPM VRQGDDQWLN 
IVRWSLFAQL NAEELGVTSA NADEVKAGTD QNVKRLLGTE GEMGKQLGLG NDWAYAIVKQ 
VGNYGEMFER NIGKGSPLEI ERGLNALWNK GGIQYAPPIR