| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rru_A0939 |
|---|
| Symbol | |
|---|
| ID | 3834396 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodospirillum rubrum ATCC 11170 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007643 |
|---|
| Strand | - |
|---|
| Start bp | 1118665 |
|---|
| End bp | 1120761 |
|---|
| Gene Length | 2097 bp |
|---|
| Protein Length | 698 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637825027 |
|---|
| Product | DNA ligase (NAD+) |
|---|
| Protein accession | YP_426027 |
|---|
| Protein GI | 83592275 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
|---|
| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.331194 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATTCCCG TCGCCGATCT CACCGAGGCC GAGGCCGCCC GCGAACTCGA ACGGCTTGCC
GCCGAGATCG CCCGCCACGA CCGGCTCTAT CACCAGCAGG ACGCGCCGGA AATCACCGAC
GGCGAGTACG ACGCCCTGGT ACGGCGCAAT AACGAGATCG AGGCCGCCTT CCCCGAACTG
GTGCGCGGCG ACAGCCCCTC GGCCCATGTC GGCGCCGCTC CGGCCGAAGG CTTCGCCAAG
GTCACCCACG CCCTGCCGAT GCTGTCGCTG GGCAATGTGT TCAGCGACGA CGAGGCCCGC
GAGTTCGACC AGCGCATCCG CCGCTTCCTC AGCCTGGATG GCGAAACGAC GATCAGCTAT
GTCGCCGAGC CCAAGATCGA TGGCCTGTCG TTTTCGGCGC GCTACGAGAA CGGCGTCTAT
CGCCGCGCCG CCACCCGGGG TGATGGCACC ACCGGCGAGG ACATCACCGC CAATCTGGCG
ACCCTGACCG ATCTGCCCCA GCGCCTGACA GGCGACGGGC CTGTGCCCGA GGTGCTGGAG
GTGCGCGGCG AGGTGTTCAT GACCAAGGCC GATTTCCGCG CCCTCAACCA ACGCCAGATC
GACGCCGGCG CCAAGCCCTT CGCCAATCCG CGCAATGCGG CGGCCGGGTC GCTGCGCCAG
CTTGATCCCG AAATCACCCG CTCGCGCTCG TTGAGCCTGT TCGCCTATGC CTCTGGCGAG
GTCAAGGGGC TGGAGGTGGA GAGCCATCAC GCCTTTCTAG AGCGCCTGAA AACCTGGGGG
TTCCCGGTCA ATCCCCAAAC CCGCCCCTGC CAGGGGGTGG AAGACCTGAT CGAAGCCACC
CACGCGTTGG CTTTGCAACG GGCGGCGCTG GATTATGATA TCGACGGCGT CGTCTATAAG
GTCGACCGCG TCGATTGGCA AAAGCGCCTG GGCTTCGTCA GCCGCGCCCC GCGCTGGGCG
ATCGCCCGCA AATTCCCCGC CGAGCGCGCC CAAACCACCG TCAAGGCCAT CCAGATCCAG
GTCGGCCGCA CCGGCACCCT GACCCCGGTC GCCATTCTTG AACCGGTCAC CGTCGGCGGC
GTCGTCGTTG GCCGGGCGAC GCTGCATAAC GAGGACGAGA TCGCCCGCAA GGATGTGCGC
ATCGGCGATA TGGTCACCAT CCAGCGCGCC GGCGATGTCA TTCCCCAGGT GGTCGAGGTT
CTGCTCGACC AGCGTCCGGC CGATAGCGCG CCCTTTGTCT TCCCCGAGAC CTGCCCGGTC
TGCGGAAGCC ACGCGGTGCG CCAAGAGGGC GAGGTCGCCC GGCGCTGCGC CGGCGGGCTG
ATCTGCTCGG CCCAGGCAGT CGAGCGCCTC AAGCATTTCG TCTCGCGCGA CGCCTTCGAT
ATCGAAGGGC TGGGCGGCAA GCATATCGAG ACCTTCCATA ATGAGGGCCT GATCACCCAA
CCGGCCGATA TTTTCGCGCT GGAAGCCAAG GACAACGAAC CCGGCGCCTT GCAGCACCTG
CGCTCGCGCG AGGGCTGGGG GCCGAAATCG GCGGAAAACC TGTTCAAGGC GATCACCGCC
CGCAAGACCA TCCCCTTGGA CCGTTTCATC TACGCCCTGG GCATCCGTCA GGTTGGTCAG
GCCACCGCCC GCCTGCTCGC CGGTCATTAC GCCAGCTTCG CCGCCTGGCG CAAGGCGATG
GACGAGGCGC AAACCGAAGG CTCCGAAGCC TTCGCCGATC TTCAAAACAT CGAAAGCATC
GGCCCCTCGG TCGCCCGCGA CCTTGTCGCC TTTTTTGGCG AAGAGCATAA CCGCGCGGCC
TTGGACGCCC TGATCGACGC CGGGGTCGAG GTTCTTGATT TCGCCCGCCC CCAGGCGGCC
GGCGACAGCC CGCTGGCCGG CAAGACCGTG GTTTTCACCG GCACCCTTGA TACCATGAGC
CGGGGCGAAG CCAAGGCCCG CGCCCTGGCG CTCGGCGCCA AGGTCACCGG CTCGGTCTCG
GCCAAGACCG ATTACGTGGT GGTCGGAGCG GACGCCGGAT CCAAGGAGAA GAAGGCCCGC
GAACTCGGCC TGACCGTCCT CAGCGAGGCC GAGTTCCGGG CGATGAGCGG TGGCTGA
|
|---|
| Protein sequence | MIPVADLTEA EAARELERLA AEIARHDRLY HQQDAPEITD GEYDALVRRN NEIEAAFPEL
VRGDSPSAHV GAAPAEGFAK VTHALPMLSL GNVFSDDEAR EFDQRIRRFL SLDGETTISY
VAEPKIDGLS FSARYENGVY RRAATRGDGT TGEDITANLA TLTDLPQRLT GDGPVPEVLE
VRGEVFMTKA DFRALNQRQI DAGAKPFANP RNAAAGSLRQ LDPEITRSRS LSLFAYASGE
VKGLEVESHH AFLERLKTWG FPVNPQTRPC QGVEDLIEAT HALALQRAAL DYDIDGVVYK
VDRVDWQKRL GFVSRAPRWA IARKFPAERA QTTVKAIQIQ VGRTGTLTPV AILEPVTVGG
VVVGRATLHN EDEIARKDVR IGDMVTIQRA GDVIPQVVEV LLDQRPADSA PFVFPETCPV
CGSHAVRQEG EVARRCAGGL ICSAQAVERL KHFVSRDAFD IEGLGGKHIE TFHNEGLITQ
PADIFALEAK DNEPGALQHL RSREGWGPKS AENLFKAITA RKTIPLDRFI YALGIRQVGQ
ATARLLAGHY ASFAAWRKAM DEAQTEGSEA FADLQNIESI GPSVARDLVA FFGEEHNRAA
LDALIDAGVE VLDFARPQAA GDSPLAGKTV VFTGTLDTMS RGEAKARALA LGAKVTGSVS
AKTDYVVVGA DAGSKEKKAR ELGLTVLSEA EFRAMSGG
|
|---|
| |