Gene Synpcc7942_2520 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSynpcc7942_2520 
Symbol 
ID3774540 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSynechococcus elongatus PCC 7942 
KingdomBacteria 
Replicon accessionNC_007604 
Strand
Start bp2601979 
End bp2602689 
Gene Length711 bp 
Protein Length236 aa 
Translation table11 
GC content53% 
IMG OID637800969 
Producthypothetical protein 
Protein accessionYP_401537 
Protein GI81301329 
COG category[R] General function prediction only 
COG ID[COG1611] Predicted Rossmann fold nucleotide-binding protein 
TIGRFAM ID[TIGR00730] conserved hypothetical protein, DprA/Smf-related, family 2 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value0.220081 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones34 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCTGCTC CCGACTGTAA CCCCCACAAA GACCTGCTCG AACGCGTACT GCGCGACAGT 
GTTTTTGATC TCTGGGCCAT GATCGATCGC ATCCTGATGC TGCCACGGTT GCCCCACGAT
CGCTTTTGTG TGTGTATTTT TGGCTCGGCA CGGCTCATGG CCGATAATCC GGTCTATCAG
GATGTGCAAT GGCTTGCTCA GGAGCTGACC TACCTAGGCT GCGACATTGT CACAGGTGGT
GGGCCCGGTT TGATGGAAGC GGCGAATGCT GGCAGTGTCA GTGCAGACCC TGAAAATCGA
ACGCGATCGG TGGGGCTCCG CATTGACCTT CCCCACGAAC AGGGCAGTAA TCCCTACGTT
GAAGAGCTGT ACGAACACAG CAACTTTTTC TCAAGACTCC ATCACTTTGT TTTAGAGGCA
GATGCTTTCG TGGTGATGCC TGGTGGAATT GGCACGCTGC TAGAGCTGGT GACTATCTGG
CAACTCCTAC AAGTGTCTAA GCTGCCGCCA ACACCCCTGA TTTTGGTGGG CTCGATGTGG
CGTGACTTCT TGATCTGGGC CAATGCTGCC ATGGCTAAAG GGCAACCAGC TCTCGCCAGT
GAAGTGGATT TAGAAATTCC AATTGCGGTT GAGCAGGTAT CCGAAGTTTT ACCTTTGTTA
CGACAAGCGC AAACTCGCTG GCAACAAAGC TGCCCAATCA TCACTAATTA G
 
Protein sequence
MSAPDCNPHK DLLERVLRDS VFDLWAMIDR ILMLPRLPHD RFCVCIFGSA RLMADNPVYQ 
DVQWLAQELT YLGCDIVTGG GPGLMEAANA GSVSADPENR TRSVGLRIDL PHEQGSNPYV
EELYEHSNFF SRLHHFVLEA DAFVVMPGGI GTLLELVTIW QLLQVSKLPP TPLILVGSMW
RDFLIWANAA MAKGQPALAS EVDLEIPIAV EQVSEVLPLL RQAQTRWQQS CPIITN