| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Synpcc7942_1911 |
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| Symbol | |
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| ID | 3775274 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Synechococcus elongatus PCC 7942 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007604 |
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| Strand | - |
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| Start bp | 1986376 |
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| End bp | 1988613 |
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| Gene Length | 2238 bp |
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| Protein Length | 745 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 637800352 |
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| Product | cold shock protein |
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| Protein accession | YP_400928 |
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| Protein GI | 81300720 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 0.725568 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACTTCT CGATTGCCAC GCTTCTGACT CAGTTCAGTG AAGGAAAGTT TGTTGCCCCA
AAACAGCTGG AAAAAAAACT GGGCTGTGAG GACGAGGACA AGAGCCGCAA ATTGCAGATT
ATCTTGGACG CTTTGGAGCG TTTAGGGCTG TTGACCAAAG ACCGAGGCAA ATACCGGCGC
AACGAAGAAA ACGAGTGGGT AGAGGCGCGG TTGCGTTGCT CGAGCAAAGG CTTTTGCTTT
GCTATTCAAG ACGCTGAAGA TGCGGAGGAT ATTTACATCC GCGAGCATCA GCTCAATCAT
GCCTGGAATG GCGATCGCGT TTTGGTGAAC GTGCTGCGTG AGGGCAGTCG CCGTCGCAGT
CCGGAAGGGG AAGTCAAGCT GATTCTGGAA CGGGCAAACA GCAGCGTCTT GGCACGAATT
ACTGAAAAAG CTGAAGGCGA GGGCTTCCGA GCCGTCCCGC TCGACGATCG CCTACTCTGT
GAACTTGATT TAGAGAGTAA CGGCCTTGAT TTAGCCGCCA ATCGTGATCA CCTGGCGAGT
GTGGCGGTTC AGCGCTATCC CTTGGCGCAA CTGCCCCCCG TCGGTAAAGT AACCCAGATT
TTGGGCAGTG ACCCCGAGTC TGCTTCACCA GTCGACCTAA TTCGTTGTAA GCACAACCTG
CCGGCCGACT GGAGTGAAGC GGCGATCGCA GCGCTGACGG ATTTGGCTCA AACGGCGGAT
GCCAATGCCA TTCAAGGTCG CTTGGATTTG CGGTCTGTAT TTACGGTGGC GATCGCAGCG
GATGATTCCC GCCCGCTCGA CGTTGCCCTG AGCCTGCAGC CGGGAGAATC TGGTGGATGG
CAAGTGATGG TTCACACCGT TGAGGTGGCT CCTTATCTGC CGCTGCAGTC TGATTTGGAT
CTTGAAGCCC AGCGGCACGG GATTGATCTG CGTTTGGGCG AGACGGCCTT GCCCTTCCTG
CCGCCCGTGC TGACTCAAGG GGTGGGTCGC TTTGCTGTGG GCGAGGATCG GCGCGCCGTT
TCCTTGCTGA TCCGCGTCGA TGCGACGGGA GCTGTTCAGG ACTATGAACT GCAACCCAGT
TTGGTGCAGC TCGATCAGGT GCTGTCTCCG GCTGAGGCAA CAGATTTACT GGCTGACAGC
AAAGCAAAGG GTGAAGGAAT CAAAGCCCTT AAAGAGCTGC AGACGATCGC TGATCTGTGG
CGAACCCAAC GGCGGGAACG GGGCGGTTTT GAACTGACGG TGACGCCGGC GATCGGCAAT
GACGAGGGGG CGTTGGGCGT TATCTCGCGA TCGCCCGCGA TCGCTGGAGC AGTCCAAGAA
ATTCTGATTC AGGCCAATCG TCTGGTCACG GAACATCTGC AAGCCTTGGA GCTGCCAGTG
CTCTACGTTG GGCAGCGATC GCCCGACCTC GGCAGCATTC AAGATGCCCA GCGGCTGGCA
GCGGGTTTGG GCCTGGCGAT CGAAGTTGAT GAGAATGAGA CCGAACTGAA TCGCTTGGCG
CTGCAGCAGT TGAGTGATGC GACCCAGACT TCCGAGCTGG CCAGCTTGCT TGACCATCTG
CTGCTGCAAA CCTTTAAGCC GAGCTTCTAC AGTACTCTGG CCGTGCCCCA CTTCAGCCTC
GGCCTAGAAA CCTATGGCCA TTTTGTTGCC CCAAGCCAGC GCTATGCCGA CCTCTGGTTG
CAGCGGGTGA TCTTGGCACT ATTCCAACAG GGTCGCGATC GCCGCTCTAG CCGCAGCAAA
GAGGGCGTCA ACATTCGTCA CAGCAGCAGC CACGGCCAGA TCAACTGGAG CGTGCTGCCA
CCGGAGGTGC AGACAGAACT CGAAACGGAT CTGAAACTCC TAGCGCAGCA GCTCAGCGAA
GCCGAAAAAC GGGCTACCGA AGCCAGTGCA GACTACCAAG GGCTCCAGAA GGCGGCCGCC
GCCAAGGCCT GCATTGGTCA GACTTTCGCT GGGGTGATTC GGGGCGTTCA ATCCTACGGC
TTCTTTGTTC AGATCGAAGC CTTGCAGGTT GAGGGACTGG TTCACGTCAG CTCGCTCAAG
GACGACTGGT ACGAATACCG ATCGCGCCAG CAGCGGTTGA TTGGCCGCAA GAATCGTCGT
CAGTTTGGTT TGGGCGATCG CGTTGAGGTG GAAATTCGCA ACGTCGATTA CTACCGCCAG
CAAATTGACC TTGGGGTGCT GCCCTTGCCG GAAGCGCAGT CGGAAACCTC CGATCGCGAA
CCCTTGGAGA TGCTGTGA
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| Protein sequence | MNFSIATLLT QFSEGKFVAP KQLEKKLGCE DEDKSRKLQI ILDALERLGL LTKDRGKYRR
NEENEWVEAR LRCSSKGFCF AIQDAEDAED IYIREHQLNH AWNGDRVLVN VLREGSRRRS
PEGEVKLILE RANSSVLARI TEKAEGEGFR AVPLDDRLLC ELDLESNGLD LAANRDHLAS
VAVQRYPLAQ LPPVGKVTQI LGSDPESASP VDLIRCKHNL PADWSEAAIA ALTDLAQTAD
ANAIQGRLDL RSVFTVAIAA DDSRPLDVAL SLQPGESGGW QVMVHTVEVA PYLPLQSDLD
LEAQRHGIDL RLGETALPFL PPVLTQGVGR FAVGEDRRAV SLLIRVDATG AVQDYELQPS
LVQLDQVLSP AEATDLLADS KAKGEGIKAL KELQTIADLW RTQRRERGGF ELTVTPAIGN
DEGALGVISR SPAIAGAVQE ILIQANRLVT EHLQALELPV LYVGQRSPDL GSIQDAQRLA
AGLGLAIEVD ENETELNRLA LQQLSDATQT SELASLLDHL LLQTFKPSFY STLAVPHFSL
GLETYGHFVA PSQRYADLWL QRVILALFQQ GRDRRSSRSK EGVNIRHSSS HGQINWSVLP
PEVQTELETD LKLLAQQLSE AEKRATEASA DYQGLQKAAA AKACIGQTFA GVIRGVQSYG
FFVQIEALQV EGLVHVSSLK DDWYEYRSRQ QRLIGRKNRR QFGLGDRVEV EIRNVDYYRQ
QIDLGVLPLP EAQSETSDRE PLEML
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