Gene Synpcc7942_1891 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSynpcc7942_1891 
Symbol 
ID3775254 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSynechococcus elongatus PCC 7942 
KingdomBacteria 
Replicon accessionNC_007604 
Strand
Start bp1964412 
End bp1964972 
Gene Length561 bp 
Protein Length186 aa 
Translation table11 
GC content47% 
IMG OID637800332 
Producthypothetical protein 
Protein accessionYP_400908 
Protein GI81300700 
COG category[S] Function unknown 
COG ID[COG1432] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value0.248989 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value0.794198 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCATTTC GCCCTAGTCG CTTGGCCATC TTCATTGATG GTAATAATAT GTTCTATGCA 
CAGCAAAAGA ACGGTTGGTT CTTTGATCCT CGTCGAGTGC TGAACTATTT TGCGAATCGA
CCAGAAATTG AGCTGGTTAA CGCTTATTGG TATACCGGTC TCAAAGATCC CCAAGATCAA
CGGGGGTTTC GGGACGCACT AGTTAGCTTA GGCTATACCG TGCGGACGAA AATGCTGAAG
GAGTTTCATG ATGAGTCCAA CGGCAATCGT TATTTTCAGA GAGCTAACTT AGATATTGAA
ATCGTTATTG ATATGTTCAA TACGGTTGAG CAATATGATG AAATTGTGCT CTTCAGTGGC
GATGGTGATT TCGAGCGTGC CATTGAACTG CTGCGCGCCA AGCAGACTCA CATCACTGTC
GTATCGACCG ATGGCATGAT CGCGCGTGAG TTACGGAATG CCACTGATCG CTACATCGAT
CTGAACGATA TTCGCAGTTT TATCGAAAAG ACTGAGCGCC CTGAACCGTT TGTCAGTGCT
CCCGTCATTG CTCCGGCATG A
 
Protein sequence
MAFRPSRLAI FIDGNNMFYA QQKNGWFFDP RRVLNYFANR PEIELVNAYW YTGLKDPQDQ 
RGFRDALVSL GYTVRTKMLK EFHDESNGNR YFQRANLDIE IVIDMFNTVE QYDEIVLFSG
DGDFERAIEL LRAKQTHITV VSTDGMIARE LRNATDRYID LNDIRSFIEK TERPEPFVSA
PVIAPA