Gene Synpcc7942_1839 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSynpcc7942_1839 
Symbol 
ID3774414 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSynechococcus elongatus PCC 7942 
KingdomBacteria 
Replicon accessionNC_007604 
Strand
Start bp1906094 
End bp1906834 
Gene Length741 bp 
Protein Length246 aa 
Translation table11 
GC content60% 
IMG OID637800280 
Producthypothetical protein 
Protein accessionYP_400856 
Protein GI81300648 
COG category[R] General function prediction only 
COG ID[COG1075] Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones33 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.028666 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGACCCAG TCAGCACCAG TTCTGCGCAG CCTGCCACAA CTGTCCAAGG CTTGCCGACG 
GTTATCCTGC CGGGCTACTT AGCGGGTGCT GCACCCTATC AGCCCTTGGC ACAGTGGCTG
AGCGATCGCG GTTTTCTAAC CACGGTGGTG CCGCTCCAAC GCAGCGACTG GTTCCCGACT
TTGGGCGGTA GACCCGTGAC GCCGATCCTA GAGGCGCTGG AAGCGACGGT TGCTCAAGTT
CTGGCAGCCA CAGGTGCAGC GAAAATCAAT TTGATCGGCC ATTCAGCCGG CGGCTGGATT
TCACGAATTT GGTTGGGCGA TCGCCCCTAT GGGCCGACTC AGCAGGCTTG GCAGGGACGC
GATCGCACGG CAGTGCTGAT CTGCCTTGGC ACCCCGCACC GCAGCCAAGA GCGCTGGACA
CGCCGCAATA TCGATTTCGT CAATGAGCAC TATCCAGATG CATTCTTCAA AGATGTTCGC
TACGTCTGTG TCGCCGGTAA AGCCGTACAG GGGGCGCGCC GCTGGGGACA GTGGGTGGCT
TACAACAGCT ACAGCTTAAC GATCGGTCAA GGCGACAGTT GGGGCGATGG GATCACGCCG
ATCGCGGCCG CCCACCTCGA AGGCGCTTTG AATCTAACCT ACGAGGCGGT CTATCACTCA
CCCCGCCCGA ATCGACTCTG GTATGGCAGC CCAGAAATTG CCGAACAGTG GCGATCGCAC
CTGGTTACAA CAGCGGCGTA A
 
Protein sequence
MDPVSTSSAQ PATTVQGLPT VILPGYLAGA APYQPLAQWL SDRGFLTTVV PLQRSDWFPT 
LGGRPVTPIL EALEATVAQV LAATGAAKIN LIGHSAGGWI SRIWLGDRPY GPTQQAWQGR
DRTAVLICLG TPHRSQERWT RRNIDFVNEH YPDAFFKDVR YVCVAGKAVQ GARRWGQWVA
YNSYSLTIGQ GDSWGDGITP IAAAHLEGAL NLTYEAVYHS PRPNRLWYGS PEIAEQWRSH
LVTTAA