| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Synpcc7942_1609 |
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| Symbol | |
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| ID | 3775676 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Synechococcus elongatus PCC 7942 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007604 |
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| Strand | + |
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| Start bp | 1675456 |
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| End bp | 1678869 |
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| Gene Length | 3414 bp |
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| Protein Length | 1137 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 637800043 |
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| Product | protein splicing (intein) site |
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| Protein accession | YP_400626 |
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| Protein GI | 81300418 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1372] Intein/homing endonuclease |
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| TIGRFAM ID | [TIGR01443] intein C-terminal splicing region
[TIGR01445] intein N-terminal splicing region
[TIGR02505] ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 0.395173 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTGCAGG AGCTATCTCG GGTTCTCAAG ATTAGTGATT TCCCCGCTAC GGCTCCTGCG
GCCAACCCTG TTTTTTACCG GACTTACAGT CGCAAGACTG CAACGGGTCG TGAGTCTTGG
CAGGAAGTCA GCGATCGCAC GATTCAAGGG CTAGCGGAAC TCGGCAAGCT GACCCAAGCA
GAAGTCGAGC TTCTGCAGCG CTACCAAGAG AAGCAGCAAT CCTTGCCCTC TGGGCGCTGG
CTCTGGGTGG GGGGCACCGA CTGGATTGCC AAGCCGGAAA ACTACAACGG TGGCTACAAC
TGCACCAGTA CTAATGTCAT TGACTGGCGC GCCTTCGGTC TGATGATGGA TCTGGCAATG
ATGGGCTGCG GCACCGGCGC CATCCTTGAG CCGAAATACA TCAACCAACT ACCCGCGATT
CGTAACGAAC TGCAAGTTTC TATCGTTGGC GCACTGGGTC AAACACCCGC AGAAGAGCGA
CAAGAGCAGA CTCGCGTTGC AATCGAGGGT AATAGCGTCA CGATTCGCGT TGGCGATAGC
CGTGCGGGTT GGGTCAAGTC TTACCAAACG CTGCTAGAAC TGAGCAGCGA CGATCGCTTT
ACCGGCCCTG TACAAGTTGC CATTGATCTG TCAGACGTGC GTCCGGCTGG GGAACGACTG
AAAGGCTTTG GCGGTGTTGC CAATCCGGTC AAACTGCCGG AACTCTACGA TCGCGTCGCG
CAAATCCTCA ATAAAGCAGT TGGTCGTCAA CTTGATTCGA TCGAGTGTTG CTTGCTGATT
GACCAAGCTG CTGTTGTTGT CGTTGCTGGT AATGTGCGGC GATCGGCGGG GATGCGCCAG
TTCGACAGTG GCGATTTGCG CGCTGCTGGT GCAAAAGAAA ATCTTTGGCA GCAGGATGAA
GCCGGTAACT GGCGAATTGA CCCAGAGCGT GATGCTCTGC GGATGGCAAA CCACACGCGG
GTTTATCACC ATAAGCCGAC TCGCGAAGAA GTTCTAGAGG CTGTCACCAA GCAGTTCTAC
AGCGGCGAAG GGGCGATTCA GTATGCTCCA GAAGCGATCG CTCGTTCTAA TGCTGACTTG
TTGACCACGC CAGAACTCCG TCAGGAATTC ATTCAAATCT ACCTAGAACT AGGTGCAGAA
GAAGCCAAGA ACTGGTTGAA AACCAATTGG CCAAATCAAA GCGATCGTGA GTTAAATCAC
CGCTTGCAAC GCTATGGTCT GAACCCCTGC GTGACGGCGG ATACGTGGGT ACATACCGGC
GAAGGTCCGC GTCAAGTCAA AGATCTGATT GGTCAGCAAC ACAGCACCTA TATCAATGGT
GAACTGTTCA GTACCACACC GGATGGTTTC TTCTGCAGCG GCATCAAGCC AGTGCTGAAA
ATCCAAACCC AAGAAGGCTA CAGCCTGCGA CTGACGGCCA ATCACCGTGT TCTCAAAGTC
ACGGCGCAAA CCCAGAAGGC GCAGTACAGC GAGTGGGTTG AAGCTGGTGA TCTGCAAGCG
GGCGATCGCA TATTGTTGCA CAACCACCGC GGTCTGCAGG CTTGGGAAGG AGTCGGTACT
GAAGCGGAAG GTTGGCTGCT TGGCAACTTC ATCGGTGATG GTTGCTTCAG TGTCAATGAA
GCAAATTATC AGCGTCAGGG GCTGTTGCGC TTCTGGGGCG AGACCCAGGC GGAAATGGCT
GAAAAGGCAC TGGCATTGGG AAAAGTCGCC TCAGTAACAA CGGCAGCTCA TGCAGCAGTC
GTTCACCCTC GGAATGGCTA CAGCCAAATC AATTCCGCCA AACTCTATCA ATTGGCAACA
AGCTTTGGCC TTAAGCAAGG GCTGAAGACG ATTACGCCAG CGATCGAGCA GGCGAGTTAC
GCCTTCTATC AAGGTTTTCT GCGCGGTCTG TTTGATGCCG ATGGCTCTGT CCAAGGCAGT
CAGGAAAAAG GCGTGAGCGT GCGCCTTGCC CAAAGTGATT TAGGGCTACT GGAAGCGGTA
CAACGAATGC TGCTACGTCT GGGCATTGCG TCAACGATCT ATCAAGAGCG ACGTCCTGCT
GGTGAGCGAC TGTTGCCCGA TTCACAACGT CAACCGAAGG CTTATTTCTG CAAAGCTCAG
CATGAATTAG CGATCGCTAA TGATAACTTG CAGATCTTTG CAGAGTTGAT TGGCTTCTTG
GATGAGGCAA AGCAAGAGAA GCTGACTGAG CTTCTGGGCG CTTACAAACG TCAACCCAAT
CGGGAGCGGT TTACTGCAAC GGTTGTTAGC CTCGAAGCAG ATGGCGTTGA AACGGTTTAT
GACTGCACGG TTCCTGGGCC TGCCCGCTTT GATGCCAATG GGCTCGTTGC TCACAACTGT
GGTGAAATTT TGGGTGCAGA TTTCCACTGC AATTTGGCGG AAGTTCACCT CAATCAAATT
GATCCACAAG ATACGAAAAC GCAAGAAGAT GCTTTCCGCG CTGGTGCCAT TTCAGTGGCA
GCCCTGCTAA ATCATCAGTT CTCAGAAGAA CGCTATCAAT TCAGTCGAGA AGTTGACCCG
ATTGTTGGCG TTTCCTTTAC GGGCCTGTTC GATTTCTTTG TCCATGCCTT TGGTACGCCG
TGGCTGGAGT GGTGGACGGA AGGTCGTCCA GAAACAGAAC AAGGCTTGGA GTTTAAGCGT
CAAGAAGCGG CTTATCTCAA CCGCTGGCGG GATGTGGTGC ATGCAGCTGT TTGGGACTAT
TGCGATCGCC ATGATCTGCG TCGTCCCAAT CGCTGCACTA CTGTTCAACC AGCTGGCACG
AAATCTTTGC TGACAGGTGC TTCACCCGGT TGGCATCCCC CCAAAGCGCA GCGGTTCCTG
CGTCGGATTA CCTTCCGTAA AAATGACCCA GTAGCGATGG CCTGCTTGGA TTACGGCTAT
AGCATTGTGC CGTCCCAGTC CGACAAGGAT GAAAATGGCA ACTTGCTCAA TGATCCCTTT
GATCCGCGCT GTACCGAATG GTTGGTGGAA ATTCCAACGG AAGTAAGCTG GGCGAATCTA
CCCGGTGCTG ATCAAGTCGA TATCAGTCAG TTCTCGGCAC TGGCGCAATT CGATTTCTAC
ATGCAGGTGC AAACGCACTA CACCACCCAC AACACCAGTG CCACGATTGA GTTTCGGGAG
CCGGAAATCC AGCCCCTTGC CGATCGCATT TATGAGGCGA TCGCGAATAA TCAGGGCTAT
ATGTCGGCGG CACTGTTGGC ACGCTTTGAT GCCAATGCCA CTTTCCCACG CTTGCCCTTT
GAACCAATCG ATAAAGCTAC CTACGAGCGC CTAGAAGCAG AAGTGGTGCA GCGTCGTCGC
ACCGATGACT TCTTGGCTGC ACTGCGGCTC TACGATTCTG GCTTCCAAGT GGAAGCAGGA
CCGGCAGGTT GTGACTCGGA TAAGTGCATG ATGCCAGAGC AAAAACCGAA TTAG
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| Protein sequence | MVQELSRVLK ISDFPATAPA ANPVFYRTYS RKTATGRESW QEVSDRTIQG LAELGKLTQA
EVELLQRYQE KQQSLPSGRW LWVGGTDWIA KPENYNGGYN CTSTNVIDWR AFGLMMDLAM
MGCGTGAILE PKYINQLPAI RNELQVSIVG ALGQTPAEER QEQTRVAIEG NSVTIRVGDS
RAGWVKSYQT LLELSSDDRF TGPVQVAIDL SDVRPAGERL KGFGGVANPV KLPELYDRVA
QILNKAVGRQ LDSIECCLLI DQAAVVVVAG NVRRSAGMRQ FDSGDLRAAG AKENLWQQDE
AGNWRIDPER DALRMANHTR VYHHKPTREE VLEAVTKQFY SGEGAIQYAP EAIARSNADL
LTTPELRQEF IQIYLELGAE EAKNWLKTNW PNQSDRELNH RLQRYGLNPC VTADTWVHTG
EGPRQVKDLI GQQHSTYING ELFSTTPDGF FCSGIKPVLK IQTQEGYSLR LTANHRVLKV
TAQTQKAQYS EWVEAGDLQA GDRILLHNHR GLQAWEGVGT EAEGWLLGNF IGDGCFSVNE
ANYQRQGLLR FWGETQAEMA EKALALGKVA SVTTAAHAAV VHPRNGYSQI NSAKLYQLAT
SFGLKQGLKT ITPAIEQASY AFYQGFLRGL FDADGSVQGS QEKGVSVRLA QSDLGLLEAV
QRMLLRLGIA STIYQERRPA GERLLPDSQR QPKAYFCKAQ HELAIANDNL QIFAELIGFL
DEAKQEKLTE LLGAYKRQPN RERFTATVVS LEADGVETVY DCTVPGPARF DANGLVAHNC
GEILGADFHC NLAEVHLNQI DPQDTKTQED AFRAGAISVA ALLNHQFSEE RYQFSREVDP
IVGVSFTGLF DFFVHAFGTP WLEWWTEGRP ETEQGLEFKR QEAAYLNRWR DVVHAAVWDY
CDRHDLRRPN RCTTVQPAGT KSLLTGASPG WHPPKAQRFL RRITFRKNDP VAMACLDYGY
SIVPSQSDKD ENGNLLNDPF DPRCTEWLVE IPTEVSWANL PGADQVDISQ FSALAQFDFY
MQVQTHYTTH NTSATIEFRE PEIQPLADRI YEAIANNQGY MSAALLARFD ANATFPRLPF
EPIDKATYER LEAEVVQRRR TDDFLAALRL YDSGFQVEAG PAGCDSDKCM MPEQKPN
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